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umccr / icav2-cli-plugins

A set of additional subcommands for icav2
MIT License
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Add data to bundle fails with the following error #225

Closed alexiswl closed 9 months ago

alexiswl commented 11 months ago 
 Received exit code "1" for command "'/home/cwl_ica_user/.icav2-cli-plugins/pyenv/bin/python'" "'/home/cwl_ica_user/.icav2-cli-plugins/plugins/bin/icav2-cli-plugins.py'" "'bundles'" "'add-data'" "'cd3991ed-3d07-416b-bd78-b0e900baa4d0'" "'--data-id'" "'fil.797f7409f94e400cc2b008dbc44487b1'"
"Traceback (most recent call last):
  File "/home/cwl_ica_user/.icav2-cli-plugins/plugins/bin/icav2-cli-plugins.py", line 13, in <module>
    sys.exit(main())
  File "/home/cwl_ica_user/.icav2-cli-plugins/pyenv/lib/python3.10/site-packages/utils/cli.py", line 102, in main
    _dispatch()
  File "/home/cwl_ica_user/.icav2-cli-plugins/pyenv/lib/python3.10/site-packages/utils/cli.py", line 94, in _dispatch
    subcommand_obj()
  File "/home/cwl_ica_user/.icav2-cli-plugins/pyenv/lib/python3.10/site-packages/subcommands/__init__.py", line 102, in __call__
    self.subcommand_obj()
  File "/home/cwl_ica_user/.icav2-cli-plugins/pyenv/lib/python3.10/site-packages/subcommands/bundles/bundles_add_data.py", line 77, in __call__
    add_data_to_bundle(
  File "/home/cwl_ica_user/.icav2-cli-plugins/pyenv/lib/python3.10/site-packages/utils/bundle_helpers.py", line 352, in add_data_to_bundle
    if json.loads(curl_stdout).get("status", None) == 409:
  File "/home/cwl_ica_user/.conda/envs/python3.10/lib/python3.10/json/__init__.py", line 346, in loads
    return _default_decoder.decode(s)
  File "/home/cwl_ica_user/.conda/envs/python3.10/lib/python3.10/json/decoder.py", line 337, in decode
    obj, end = self.raw_decode(s, idx=_w(s, 0).end())
  File "/home/cwl_ica_user/.conda/envs/python3.10/lib/python3.10/json/decoder.py", line 355, in raw_decode
    raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)"
2023-10-23 23:41:57,631 - ERROR    - icav2_gh_helpers          - add_data_to_bundle                       : LineNo. 616  - 
2023-10-23 23:41:57,632 - ERROR    - icav2_gh_helpers          - add_data_to_bundle                       : LineNo. 617  - Traceback (most recent call last):