Support MarkDups WGS BAM inputs for oncoanalyser - Githubissues

umccr / nextflow-stack

AWS stack to run Nextflow pipelines on Batch using shared resources

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Support MarkDups WGS BAM inputs for oncoanalyser #107

Closed scwatts closed 2 months ago

scwatts commented 3 months ago

set BAM type to bam_markdups where existing WGS results are provided
also see umccr/data-portal-apis#707