Apply optimisations for oncoanalyser processes - Githubissues

umccr / nextflow-stack

AWS stack to run Nextflow pipelines on Batch using shared resources

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Apply optimisations for oncoanalyser processes #109

Closed scwatts closed 2 months ago

scwatts commented 2 months ago

increase size of DNA FASTQs splits
create a 32 CPU / 64 GB memory queue and place bwa-mem2 jobs on it
run MarkDups jobs on the 16 CPU / 128 GB memory queue
remove the 32 CPU / 128 GB memory queue