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nextflow-stack
AWS stack to run Nextflow pipelines on Batch using shared resources
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Apply optimisations for oncoanalyser processes
#109
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scwatts
closed
2 months ago
scwatts
commented
2 months ago
increase size of DNA FASTQs splits
create a 32 CPU / 64 GB memory queue and place bwa-mem2 jobs on it
run MarkDups jobs on the 16 CPU / 128 GB memory queue
remove the 32 CPU / 128 GB memory queue