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nextflow-stack
AWS stack to run Nextflow pipelines on Batch using shared resources
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Disable FusionFS/Wave for oncoanalyser
#63
Closed
scwatts
closed
1 year ago
scwatts
commented
1 year ago
Disabled FusionFS/Wave for oncoanalyser
Made AWS CLIv2 available at instance-level via launch template rather than through modified Docker images
Wave was previously including AWS CLIv2 (and FusionFS) as extra image layers at runtime
Switched to EC2 instances without local SSD storage, now using EBS storage only
Included
Amazon Elastic Block Store Autoscale
in all instances
Provided two EBS storage mountpoints
System (default): 30 GB for Docker images and temp files
Task scratch: 20 GB at launch with EBS autoscale incrementing in ~100 GB blocks