Use fixed GRIDSS image for VIRUSBreakend - Githubissues

umccr / nextflow-stack

AWS stack to run Nextflow pipelines on Batch using shared resources

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Use fixed GRIDSS image for VIRUSBreakend #97

Closed scwatts closed 7 months ago

scwatts commented 7 months ago

replace slow BusyBox grep with GNU grep
restore missing Dfam database required by RepeatMasker