Use biomaRt or gget for key gene table construction

[pdiakumis]

biomaRt is an excellent option for generating gene panels, and will help with refdata reproducibility.

Alternatively, explore gget.

Need to consolidate a few related things:

• https://bioconductor.org/packages/release/bioc/vignettes/biomaRt/inst/doc/accessing_ensembl.html
• https://github.com/umccr/NGS_Utils/tree/master/ngs_utils/reference_data/key_genes
• https://github.com/umccr/NGS_Utils/blob/master/scripts/generate_bed.py
• https://github.com/vladsaveliev/bed_annotation

[pdiakumis]

Ended up using biomaRt - example at https://github.com/umccr/NGS_Utils/blob/ada22f20a1dba0cebe71b305277e386ef0940757/ngs_utils/reference_data/key_genes/renew_cancer_genes_ensembl107.qmd#L40.