vcf2maf: ignore "Use of uninitialized value" warnings (fixes #61)

umccr / umccrise

:snake: DRAGEN Tumor/Normal workflow post-processing

https://umccr.github.io/umccrise/

MIT License

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vcf2maf: ignore "Use of uninitialized value" warnings (fixes #61) #71

Closed pdiakumis closed 3 years ago

pdiakumis commented 3 years ago

Ignoring "Use of uninitialized value in list assignment" warning from vcf2maf.pl which can be generated thousands of times. Adapted from https://stackoverflow.com/a/52575087/2169986.

Fixes #61

brainstorm commented 3 years ago

Nice hack! ;)

I would have patched upstream (IIRC I tracked a similar error down to snpEff?), but anyway, I guess umccrise needs to be scrapped and substituted for something better, so it LGTM for now ;)