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umccrise
:snake: DRAGEN Tumor/Normal workflow post-processing
https://umccr.github.io/umccrise/
MIT License
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Minor DRAGEN MultiQC updates
#87
Closed
scwatts
closed
2 years ago
scwatts
commented
2 years ago
Umccrise
use
FORMAT/SQ
value as
QUAL
for DRAGEN somatic variants when generating BCFtools stats
update MultiQC reference data to align with above change
remove DRAGEN germline fragment length histogram file from MultiQC reference set (see NGS Utils changes below)
expand MultiQC template sample ordering and highlighting
explicitly provide sample name and read group to MultiQC DRAGEN mapping metrics processor
use NGS Utils 2.9.2 and umccr/MultiQC 1.13dev+umccrise.0.0.1 in conda environments
improve DRAGEN sample identifier checks
pin conda and mamba versions - issues encountered creating conda environments with newer versions
umccr/MultiQC
overhaul DRAGEN mapping metrics to accept sample name + read group from Umccrise; enables differentiation of RGs
correct DRAGEN fragment length histogram plot - germline data from the somatic file was previously overwritten
fix bug in ewels/MultiQC relating to processing custom content
NGS Utils
do not include the DRAGEN germline fragment length histogram file when collecting inputs for MultiQC
Umccrise
FORMAT/SQvalue asQUALfor DRAGEN somatic variants when generating BCFtools statsumccr/MultiQC
NGS Utils