umr-lops / xsar

Synthetic Aperture Radar (SAR) Level-1 GRD python mapper for efficient xarray/dask based processing
https://cyclobs.ifremer.fr/static/sarwing_datarmor/xsar/
MIT License
29 stars 8 forks source link

Issue with rioxarray==0.15.6 #215

Open Skealz opened 5 months ago

Skealz commented 5 months ago

Downgrading to rioxarray==0.15.5 makes it work.

24/06/2024 18:35:38 INFO main.py(38) input file: /home/datawork-cersat-public/project/mpc-sentinel1/data/esa/sentinel-1b/L1/IW/S1B_IW_GRDH_20:39:41 [369/1993]GRDH_1SDV_20211102T154832_20211102T154857_029411_038293_D8E0.SAFE                                                                                             
24/06/2024 18:35:39 INFO inversion.py(600) recalibration is False : Kersten formula is not applied                                                            
24/06/2024 18:35:39 INFO utils.py(479) BlockingActorProxy: Transparent proxy for from_dict                                                                    
/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/python3.
10/site-packages/numpy/core/numeric.py:407: RuntimeWarning: invalid value encountered in cast                                                                 
  multiarray.copyto(res, fill_value, casting='unsafe')                                                                                                        
24/06/2024 18:35:49 WARNING base_dataset.py(867) Raster variable are experimental                                                                             /home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/python3.10/site-packages/xarray/core/dataset.py:274: UserWarning: The specified chunks separate the stored chunks along dimension "time" starting at index 1. This could degrade performance. Instead, consider rechunking after loading.                                                                                           
  warnings.warn(                                                                                                                                              
24/06/2024 18:35:51 INFO inversion.py(631) Traceback (most recent call last):                                                                                 
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/grdwindinversion/inversion.py", line 603, in makeL2                                                                                  
    xsar_dataset = fct_dataset(                                                                                                                               
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/python3.10/site-packages/xsar/sentinel1_dataset.py", line 297, in __init__                                                                                    
    self.add_high_resolution_variables(                                                                                                                       
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/xsar/sentinel1_dataset.py", line 533, in add_high_resolution_variables                                                                   rasters = self._load_rasters_vars()                                                                                                                       
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/xsar/utils.py", line 95, in wrapper                                                                                                  
    result = f(*args, **kwargs)                                                                                                                                 File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/python3.10/site-packages/xsar/base_dataset.py", line 909, in _load_rasters_vars                                                                               
    reprojected_ds = self.map_raster(raster_ds).rename(                        
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/xsar/utils.py", line 95, in wrapper                                                                                                  
    result = f(*args, **kwargs)                                                
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/xsar/base_dataset.py", line 859, in map_raster                                                                                       
    return self._set_rio(mapped_ds)                                            
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/xsar/base_dataset.py", line 267, in _set_rio                                                                                             ds[v] = ds[v].rio.write_gcps(                                              
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/site-packages/rioxarray/rioxarray.py", line 1242, in write_gcps                                                                                    
    data_obj.coords[grid_mapping_name].attrs["gcps"] = json.dumps(geojson_gcps) 
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/json/__init__.py", line 231, in dumps                                                                                                                  return _default_encoder.encode(obj)                                                                                                                       
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/json/encoder.py", line 199, in encode                                                                                                              
    chunks = self.iterencode(o, _one_shot=True)                                                                                                               
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/json/encoder.py", line 257, in iterencode                                                                                                          
    return _iterencode(o, 0)                                                                                                                                  
  File "/home/datawork-cersat-public/cache/project/sarwing/commits/2024v6v24_1v0_0v2v3vpost10_1v0v8_1v0v6_1v0v6_1v1v11_1v0v2_1v0v1_1v2v0/grdwindinversion/lib/
python3.10/json/encoder.py", line 179, in default                                                                                                             
    raise TypeError(f'Object of type {o.__class__.__name__} '                                                                                                 
TypeError: Object of type int64 is not JSON serializable                                                                                                      

24/06/2024 18:35:51 ERROR inversion.py(632) Object of type int64 is not JSON serializable