search

umyelab / LabGym

Quantify user-defined behaviors.
GNU General Public License v3.0
64 stars 5 forks source link

Missing __main__.py prevents GUI from running #74

Closed karinmcode closed 10 months ago

karinmcode commented 10 months ago

Hi, Thank you for this software. I solved the issue regarding Missing main.py that prevents the GUI from running. I had to manually copy the main.py here : miniconda3/envs/labgym/lib/python3.10/site-packages/LabGym/main.py

(labgym) karinmorandell@karins-mbp-2 ~ % python3 -m LabGym
Traceback (most recent call last): File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/scipy/init.py", line 143, in from scipy._lib._ccallback import LowLevelCallable File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/scipy/_lib/_ccallback.py", line 1, in from . import _ccallback_c File "_ccallback_c.pyx", line 209, in init scipy._lib._ccallback_c File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/ctypes/init.py", line 8, in from _ctypes import Union, Structure, Array ImportError: dlopen(/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/lib-dynload/_ctypes.cpython-310-darwin.so, 0x0002): Library not loaded: @rpath/libffi.8.dylib Referenced from: <179FE86B-D7D3-3317-91A0-93B90E328260> /Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/lib-dynload/_ctypes.cpython-310-darwin.so Reason: tried: '/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/lib-dynload/../../libffi.8.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/lib-dynload/../../libffi.8.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/Users/karinmorandell/miniconda3/envs/labgym/bin/../lib/libffi.8.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/Users/karinmorandell/miniconda3/envs/labgym/bin/../lib/libffi.8.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/usr/local/lib/libffi.8.dylib' (no such file), '/usr/lib/libffi.8.dylib' (no such file, not in dyld cache)

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/runpy.py", line 196, in _run_module_as_main return _run_code(code, main_globals, None, File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/runpy.py", line 86, in _run_code exec(code, run_globals) File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/LabGym/main.py", line 1, in from . import gui File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/LabGym/gui.py", line 26, in from .gui_categorizers import WindowLv2_GenerateExamples,WindowLv2_TrainCategorizers,WindowLv2_TestCategorizers File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/LabGym/gui_categorizers.py", line 26, in from .analyzebehaviors import AnalyzeAnimal File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/LabGym/analyzebehaviors.py", line 21, in from .tools import * File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/LabGym/tools.py", line 26, in import scipy.ndimage as ndimage File "/Users/karinmorandell/miniconda3/envs/labgym/lib/python3.10/site-packages/scipy/init.py", line 148, in raise ImportError(msg) from e ImportError: The scipy install you are using seems to be broken, (extension modules cannot be imported), please try reinstalling. (labgym) karinmorandell@karins-mbp-2 ~ % conda deactivate (base) karinmorandell@karins-mbp-2 ~ % conda remove --name labgym --all

Remove all packages in environment /Users/karinmorandell/miniconda3/envs/labgym:

Package Plan

environment location: /Users/karinmorandell/miniconda3/envs/labgym

The following packages will be REMOVED:

alabaster-0.7.12-pyhd3eb1b0_0 applaunchservices-0.3.0-py310hecd8cb5_0 appnope-0.1.2-py310hecd8cb5_1001 arrow-1.2.3-py310hecd8cb5_1 astroid-2.14.2-py310hecd8cb5_0 asttokens-2.0.5-pyhd3eb1b0_0 atomicwrites-1.4.0-py_0 attrs-23.1.0-py310hecd8cb5_0 autopep8-1.6.0-pyhd3eb1b0_1 babel-2.11.0-py310hecd8cb5_0 backcall-0.2.0-pyhd3eb1b0_0 beautifulsoup4-4.12.2-py310hecd8cb5_0 binaryornot-0.4.4-pyhd3eb1b0_1 black-23.3.0-py310hecd8cb5_0 bleach-4.1.0-pyhd3eb1b0_0 brotli-python-1.0.9-py310he9d5cce_7 bzip2-1.0.8-h620ffc9_4 ca-certificates-2023.08.22-hecd8cb5_0 certifi-2023.7.22-py310hecd8cb5_0 cffi-1.15.1-py310h6c40b1e_3 chardet-4.0.0-py310hecd8cb5_1003 charset-normalizer-2.0.4-pyhd3eb1b0_0 click-8.1.7-py310hecd8cb5_0 cloudpickle-2.2.1-py310hecd8cb5_0 colorama-0.4.6-py310hecd8cb5_0 comm-0.1.2-py310hecd8cb5_0 cookiecutter-1.7.3-pyhd3eb1b0_0 cryptography-41.0.3-py310h30e54ef_0 cyrus-sasl-2.1.28-h3973f50_1 debugpy-1.6.7-py310hcec6c5f_0 decorator-5.1.1-pyhd3eb1b0_0 defusedxml-0.7.1-pyhd3eb1b0_0 diff-match-patch-20200713-pyhd3eb1b0_0 dill-0.3.7-py310hecd8cb5_0 docstring-to-markdown-0.11-py310hecd8cb5_0 docutils-0.18.1-py310hecd8cb5_3 exceptiongroup-1.0.4-py310hecd8cb5_0 executing-0.8.3-pyhd3eb1b0_0 flake8-6.0.0-py310hecd8cb5_0 gettext-0.21.0-he85b6c0_1 glib-2.69.1-hfff2838_2 gst-plugins-base-1.14.1-hcec6c5f_1 gstreamer-1.14.1-h6c40b1e_1 icu-73.1-hcec6c5f_0 idna-3.4-py310hecd8cb5_0 imagesize-1.4.1-py310hecd8cb5_0 importlib-metadata-6.0.0-py310hecd8cb5_0 importlib_metadata-6.0.0-hd3eb1b0_0 inflection-0.5.1-py310hecd8cb5_0 intervaltree-3.1.0-pyhd3eb1b0_0 ipykernel-6.25.0-py310h20db666_0 ipython-8.15.0-py310hecd8cb5_0 ipython_genutils-0.2.0-pyhd3eb1b0_1 isort-5.9.3-pyhd3eb1b0_0 jaraco.classes-3.2.1-pyhd3eb1b0_0 jedi-0.18.1-py310hecd8cb5_1 jellyfish-1.0.1-py310haa3eb71_0 jinja2-3.1.2-py310hecd8cb5_0 jinja2-time-0.2.0-pyhd3eb1b0_3 jpeg-9e-h6c40b1e_1 jsonschema-4.19.2-py310hecd8cb5_0 jsonschema-specifications-2023.7.1-py310hecd8cb5_0 jupyter_client-8.6.0-py310hecd8cb5_0 jupyter_core-5.5.0-py310hecd8cb5_0 jupyterlab_pygments-0.1.2-py_0 keyring-23.13.1-py310hecd8cb5_0 krb5-1.20.1-h428f121_1 lazy-object-proxy-1.6.0-py310hca72f7f_0 libclang-14.0.6-default_hd95374b_1 libclang13-14.0.6-default_habbcc1a_1 libcxx-14.0.6-h9765a3e_0 libedit-3.1.20221030-h6c40b1e_0 libffi-3.4.4-hecd8cb5_0 libiconv-1.16-hca72f7f_2 libllvm14-14.0.6-h91fad77_3 libpng-1.6.39-h6c40b1e_0 libpq-12.15-h04015c4_1 libsodium-1.0.18-h1de35cc_0 libspatialindex-1.9.3-h23ab428_0 libxml2-2.10.4-h1bd7e62_1 llvm-openmp-14.0.6-h0dcd299_0 lz4-c-1.9.4-hcec6c5f_0 markupsafe-2.1.1-py310hca72f7f_0 matplotlib-inline-0.1.6-py310hecd8cb5_0 mccabe-0.7.0-pyhd3eb1b0_0 mistune-2.0.4-py310hecd8cb5_0 more-itertools-8.12.0-pyhd3eb1b0_0 mypy_extensions-1.0.0-py310hecd8cb5_0 mysql-5.7.24-h1a8d504_2 nbclient-0.8.0-py310hecd8cb5_0 nbconvert-7.10.0-py310hecd8cb5_0 nbformat-5.9.2-py310hecd8cb5_0 ncurses-6.4-hcec6c5f_0 nest-asyncio-1.5.6-py310hecd8cb5_0 numpydoc-1.5.0-py310hecd8cb5_0 openssl-3.0.12-h1a28f6b_0 packaging-23.1-py310hecd8cb5_0 pandocfilters-1.5.0-pyhd3eb1b0_0 parso-0.8.3-pyhd3eb1b0_0 pathspec-0.10.3-py310hecd8cb5_0 pcre-8.45-h23ab428_0 pexpect-4.8.0-pyhd3eb1b0_3 pickleshare-0.7.5-pyhd3eb1b0_1003 pip-23.3-py310hecd8cb5_0 platformdirs-3.10.0-py310hecd8cb5_0 pluggy-1.0.0-py310hecd8cb5_1 ply-3.11-py310hecd8cb5_0 poyo-0.5.0-pyhd3eb1b0_0 prompt-toolkit-3.0.36-py310hecd8cb5_0 psutil-5.9.0-py310hca72f7f_0 ptyprocess-0.7.0-pyhd3eb1b0_2 pure_eval-0.2.2-pyhd3eb1b0_0 pycodestyle-2.10.0-py310hecd8cb5_0 pycparser-2.21-pyhd3eb1b0_0 pydocstyle-6.3.0-py310hecd8cb5_0 pyflakes-3.0.1-py310hecd8cb5_0 pygments-2.15.1-py310hecd8cb5_1 pylint-2.16.2-py310hecd8cb5_0 pylint-venv-2.3.0-py310hecd8cb5_0 pyls-spyder-0.4.0-pyhd3eb1b0_0 pyobjc-core-9.0-py310h9205ec4_1 pyobjc-framework-cocoa-9.0-py310h9205ec4_0 pyobjc-framework-coreservices-9.0-py310h46256e1_0 pyobjc-framework-fsevents-9.0-py310hecd8cb5_0 pyopenssl-23.2.0-py310hecd8cb5_0 pyqt-5.15.10-py310hcec6c5f_0 pyqt5-sip-12.13.0-py310h6c40b1e_0 pyqtwebengine-5.15.10-py310hcec6c5f_0 pysocks-1.7.1-py310hecd8cb5_0 python-3.10.13-hb885b13_0 python-dateutil-2.8.2-pyhd3eb1b0_0 python-fastjsonschema-2.16.2-py310hecd8cb5_0 python-lsp-black-1.2.1-py310hecd8cb5_0 python-lsp-jsonrpc-1.0.0-pyhd3eb1b0_0 python-lsp-server-1.7.2-py310hecd8cb5_0 python-slugify-5.0.2-pyhd3eb1b0_0 python.app-3-py310hca72f7f_0 pytoolconfig-1.2.5-py310hecd8cb5_1 pytz-2023.3.post1-py310hecd8cb5_0 pyyaml-6.0.1-py310h6c40b1e_0 pyzmq-25.1.0-py310hcec6c5f_0 qdarkstyle-3.0.2-pyhd3eb1b0_0 qstylizer-0.2.2-py310hecd8cb5_0 qt-main-5.15.2-hf83fbd5_10 qt-webengine-5.15.9-h90a370e_7 qtawesome-1.2.2-py310hecd8cb5_0 qtconsole-5.4.2-py310hecd8cb5_0 qtpy-2.2.0-py310hecd8cb5_0 readline-8.2-hca72f7f_0 referencing-0.30.2-py310hecd8cb5_0 requests-2.31.0-py310hecd8cb5_0 rope-1.7.0-py310hecd8cb5_0 rpds-py-0.10.6-py310hf2ad997_0 rtree-1.0.1-py310hecd8cb5_0 setuptools-68.0.0-py310hecd8cb5_0 sip-6.7.12-py310hcec6c5f_0 six-1.16.0-pyhd3eb1b0_1 snowballstemmer-2.2.0-pyhd3eb1b0_0 sortedcontainers-2.4.0-pyhd3eb1b0_0 soupsieve-2.5-py310hecd8cb5_0 sphinx-5.0.2-py310hecd8cb5_0 sphinxcontrib-applehelp-1.0.2-pyhd3eb1b0_0 sphinxcontrib-devhelp-1.0.2-pyhd3eb1b0_0 sphinxcontrib-htmlhelp-2.0.0-pyhd3eb1b0_0 sphinxcontrib-jsmath-1.0.1-pyhd3eb1b0_0 sphinxcontrib-qthelp-1.0.3-pyhd3eb1b0_0 sphinxcontrib-serializinghtml-1.1.5-pyhd3eb1b0_0 spyder-5.4.3-py310hecd8cb5_1 spyder-kernels-2.4.4-py310hecd8cb5_0 sqlite-3.41.2-h6c40b1e_0 stack_data-0.2.0-pyhd3eb1b0_0 text-unidecode-1.3-pyhd3eb1b0_0 textdistance-4.2.1-pyhd3eb1b0_0 three-merge-0.1.1-pyhd3eb1b0_0 tinycss2-1.2.1-py310hecd8cb5_0 tk-8.6.12-h5d9f67b_0 toml-0.10.2-pyhd3eb1b0_0 tomli-2.0.1-py310hecd8cb5_0 tomlkit-0.11.1-py310hecd8cb5_0 tornado-6.3.3-py310h6c40b1e_0 traitlets-5.7.1-py310hecd8cb5_0 typing-extensions-4.7.1-py310hecd8cb5_0 typing_extensions-4.7.1-py310hecd8cb5_0 tzdata-2023c-h04d1e81_0 ujson-5.4.0-py310he9d5cce_0 unidecode-1.2.0-pyhd3eb1b0_0 urllib3-1.26.18-py310hecd8cb5_0 watchdog-2.1.6-py310h999c104_0 wcwidth-0.2.5-pyhd3eb1b0_0 webencodings-0.5.1-py310hecd8cb5_1 whatthepatch-1.0.2-py310hecd8cb5_0 wheel-0.41.2-py310hecd8cb5_0 wrapt-1.14.1-py310hca72f7f_0 wurlitzer-3.0.2-py310hecd8cb5_0 xz-5.4.2-h80987f9_0 yaml-0.2.5-haf1e3a3_0 yapf-0.31.0-pyhd3eb1b0_0 zeromq-4.3.4-h23ab428_0 zipp-3.11.0-py310hecd8cb5_0 zlib-1.2.13-h4dc903c_0 zstd-1.5.5-hc035e20_0

Proceed ([y]/n)? y

Preparing transaction: done Verifying transaction: done Executing transaction: done (base) karinmorandell@karins-mbp-2 ~ % conda create -n labgym python=3.10 Collecting package metadata (current_repodata.json): done Solving environment: done

Package Plan

environment location: /Users/karinmorandell/miniconda3/envs/labgym

added / updated specs:

The following NEW packages will be INSTALLED:

bzip2 pkgs/main/osx-arm64::bzip2-1.0.8-h620ffc9_4 ca-certificates pkgs/main/osx-arm64::ca-certificates-2023.08.22-hca03da5_0 libffi pkgs/main/osx-arm64::libffi-3.4.4-hca03da5_0 ncurses pkgs/main/osx-arm64::ncurses-6.4-h313beb8_0 openssl pkgs/main/osx-arm64::openssl-3.0.12-h1a28f6b_0 pip pkgs/main/osx-arm64::pip-23.3-py310hca03da5_0 python pkgs/main/osx-arm64::python-3.10.13-hb885b13_0 readline pkgs/main/osx-arm64::readline-8.2-h1a28f6b_0 setuptools pkgs/main/osx-arm64::setuptools-68.0.0-py310hca03da5_0 sqlite pkgs/main/osx-arm64::sqlite-3.41.2-h80987f9_0 tk pkgs/main/osx-arm64::tk-8.6.12-hb8d0fd4_0 tzdata pkgs/main/noarch::tzdata-2023c-h04d1e81_0 wheel pkgs/main/osx-arm64::wheel-0.41.2-py310hca03da5_0 xz pkgs/main/osx-arm64::xz-5.4.2-h80987f9_0 zlib pkgs/main/osx-arm64::zlib-1.2.13-h5a0b063_0

Proceed ([y]/n)? y

Downloading and Extracting Packages:

Preparing transaction: done Verifying transaction: done Executing transaction: done #

To activate this environment, use

#

$ conda activate labgym

#

To deactivate an active environment, use

#

$ conda deactivate

(base) karinmorandell@karins-mbp-2 ~ % conda activate labgym

(labgym) karinmorandell@karins-mbp-2 ~ % pip install LabGym

Collecting LabGym Using cached LabGym-2.2.2-py3-none-any.whl Collecting tensorflow (from LabGym) Using cached tensorflow-2.14.0-cp310-cp310-macosx_12_0_arm64.whl.metadata (3.3 kB) Collecting matplotlib (from LabGym) Using cached matplotlib-3.8.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) Collecting opencv-contrib-python (from LabGym) Using cached opencv_contrib_python-4.8.1.78-cp37-abi3-macosx_11_0_arm64.whl.metadata (19 kB) Collecting opencv-python (from LabGym) Using cached opencv_python-4.8.1.78-cp37-abi3-macosx_11_0_arm64.whl.metadata (19 kB) Collecting openpyxl (from LabGym) Using cached openpyxl-3.1.2-py2.py3-none-any.whl (249 kB) Collecting xlsxwriter (from LabGym) Using cached XlsxWriter-3.1.9-py3-none-any.whl.metadata (2.6 kB) Collecting pandas (from LabGym) Using cached pandas-2.1.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (18 kB) Collecting pathlib (from LabGym) Using cached pathlib-1.0.1-py3-none-any.whl (14 kB) Collecting scikit-learn (from LabGym) Using cached scikit_learn-1.3.2-cp310-cp310-macosx_12_0_arm64.whl.metadata (11 kB) Collecting scikit-image (from LabGym) Using cached scikit_image-0.22.0-cp310-cp310-macosx_12_0_arm64.whl.metadata (13 kB) Collecting seaborn (from LabGym) Using cached seaborn-0.13.0-py3-none-any.whl.metadata (5.3 kB) Collecting wxPython (from LabGym) Using cached wxPython-4.2.1-cp310-cp310-macosx_10_10_universal2.whl.metadata (2.9 kB) Collecting scikit-posthocs (from LabGym) Using cached scikit_posthocs-0.8.0-py3-none-any.whl.metadata (5.9 kB) Collecting torch (from LabGym) Using cached torch-2.1.0-cp310-none-macosx_11_0_arm64.whl.metadata (24 kB) Collecting torchvision (from LabGym) Using cached torchvision-0.16.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.6 kB) Collecting contourpy>=1.0.1 (from matplotlib->LabGym) Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) Collecting cycler>=0.10 (from matplotlib->LabGym) Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib->LabGym) Using cached fonttools-4.44.0-cp310-cp310-macosx_10_9_universal2.whl.metadata (153 kB) Collecting kiwisolver>=1.3.1 (from matplotlib->LabGym) Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) Collecting numpy<2,>=1.21 (from matplotlib->LabGym) Using cached numpy-1.26.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) Collecting packaging>=20.0 (from matplotlib->LabGym) Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB) Collecting pillow>=8 (from matplotlib->LabGym) Using cached Pillow-10.1.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.5 kB) Collecting pyparsing>=2.3.1 (from matplotlib->LabGym) Using cached pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB) Collecting python-dateutil>=2.7 (from matplotlib->LabGym) Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting et-xmlfile (from openpyxl->LabGym) Using cached et_xmlfile-1.1.0-py3-none-any.whl (4.7 kB) Collecting pytz>=2020.1 (from pandas->LabGym) Using cached pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.1 (from pandas->LabGym) Using cached tzdata-2023.3-py2.py3-none-any.whl (341 kB) Collecting scipy>=1.8 (from scikit-image->LabGym) Using cached scipy-1.11.3-cp310-cp310-macosx_12_0_arm64.whl.metadata (112 kB) Collecting networkx>=2.8 (from scikit-image->LabGym) Using cached networkx-3.2.1-py3-none-any.whl.metadata (5.2 kB) Collecting imageio>=2.27 (from scikit-image->LabGym) Using cached imageio-2.32.0-py3-none-any.whl.metadata (4.9 kB) Collecting tifffile>=2022.8.12 (from scikit-image->LabGym) Using cached tifffile-2023.9.26-py3-none-any.whl.metadata (30 kB) Collecting lazy_loader>=0.3 (from scikit-image->LabGym) Using cached lazy_loader-0.3-py3-none-any.whl.metadata (4.3 kB) Collecting joblib>=1.1.1 (from scikit-learn->LabGym) Using cached joblib-1.3.2-py3-none-any.whl.metadata (5.4 kB) Collecting threadpoolctl>=2.0.0 (from scikit-learn->LabGym) Using cached threadpoolctl-3.2.0-py3-none-any.whl.metadata (10.0 kB) Collecting statsmodels (from scikit-posthocs->LabGym) Using cached statsmodels-0.14.0-cp310-cp310-macosx_11_0_arm64.whl (9.4 MB) Collecting tensorflow-macos==2.14.0 (from tensorflow->LabGym) Using cached tensorflow_macos-2.14.0-cp310-cp310-macosx_12_0_arm64.whl.metadata (3.9 kB) Collecting absl-py>=1.0.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached absl_py-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting astunparse>=1.6.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached astunparse-1.6.3-py2.py3-none-any.whl (12 kB) Collecting flatbuffers>=23.5.26 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached flatbuffers-23.5.26-py2.py3-none-any.whl.metadata (850 bytes) Collecting gast!=0.5.0,!=0.5.1,!=0.5.2,>=0.2.1 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached gast-0.5.4-py3-none-any.whl (19 kB) Collecting google-pasta>=0.1.1 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached google_pasta-0.2.0-py3-none-any.whl (57 kB) Collecting h5py>=2.9.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached h5py-3.10.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.5 kB) Collecting libclang>=13.0.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached libclang-16.0.6-py2.py3-none-macosx_11_0_arm64.whl.metadata (5.2 kB) Collecting ml-dtypes==0.2.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached ml_dtypes-0.2.0-cp310-cp310-macosx_10_9_universal2.whl.metadata (20 kB) Collecting opt-einsum>=2.3.2 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached opt_einsum-3.3.0-py3-none-any.whl (65 kB) Collecting protobuf!=4.21.0,!=4.21.1,!=4.21.2,!=4.21.3,!=4.21.4,!=4.21.5,<5.0.0dev,>=3.20.3 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached protobuf-4.25.0-cp37-abi3-macosx_10_9_universal2.whl.metadata (541 bytes) Requirement already satisfied: setuptools in ./miniconda3/envs/labgym/lib/python3.10/site-packages (from tensorflow-macos==2.14.0->tensorflow->LabGym) (68.0.0) Collecting six>=1.12.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting termcolor>=1.1.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached termcolor-2.3.0-py3-none-any.whl (6.9 kB) Collecting typing-extensions>=3.6.6 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached typing_extensions-4.8.0-py3-none-any.whl.metadata (3.0 kB) Collecting wrapt<1.15,>=1.11.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached wrapt-1.14.1-cp310-cp310-macosx_11_0_arm64.whl (35 kB) Collecting tensorflow-io-gcs-filesystem>=0.23.1 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached tensorflow_io_gcs_filesystem-0.34.0-cp310-cp310-macosx_12_0_arm64.whl.metadata (14 kB) Collecting grpcio<2.0,>=1.24.3 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached grpcio-1.59.2-cp310-cp310-macosx_12_0_universal2.whl.metadata (4.0 kB) Collecting tensorboard<2.15,>=2.14 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached tensorboard-2.14.1-py3-none-any.whl.metadata (1.7 kB) Collecting tensorflow-estimator<2.15,>=2.14.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached tensorflow_estimator-2.14.0-py2.py3-none-any.whl.metadata (1.3 kB) Collecting keras<2.15,>=2.14.0 (from tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached keras-2.14.0-py3-none-any.whl.metadata (2.4 kB) Collecting filelock (from torch->LabGym) Using cached filelock-3.13.1-py3-none-any.whl.metadata (2.8 kB) Collecting sympy (from torch->LabGym) Using cached sympy-1.12-py3-none-any.whl (5.7 MB) Collecting jinja2 (from torch->LabGym) Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) Collecting fsspec (from torch->LabGym) Using cached fsspec-2023.10.0-py3-none-any.whl.metadata (6.8 kB) Collecting requests (from torchvision->LabGym) Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting pillow>=8 (from matplotlib->LabGym) Using cached Pillow-10.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.5 kB) Collecting MarkupSafe>=2.0 (from jinja2->torch->LabGym) Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB) Collecting charset-normalizer<4,>=2 (from requests->torchvision->LabGym) Using cached charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests->torchvision->LabGym) Using cached idna-3.4-py3-none-any.whl (61 kB) Collecting urllib3<3,>=1.21.1 (from requests->torchvision->LabGym) Using cached urllib3-2.0.7-py3-none-any.whl.metadata (6.6 kB) Collecting certifi>=2017.4.17 (from requests->torchvision->LabGym) Using cached certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB) Collecting patsy>=0.5.2 (from statsmodels->scikit-posthocs->LabGym) Using cached patsy-0.5.3-py2.py3-none-any.whl (233 kB) Collecting mpmath>=0.19 (from sympy->torch->LabGym) Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) Requirement already satisfied: wheel<1.0,>=0.23.0 in ./miniconda3/envs/labgym/lib/python3.10/site-packages (from astunparse>=1.6.0->tensorflow-macos==2.14.0->tensorflow->LabGym) (0.41.2) Collecting google-auth<3,>=1.6.3 (from tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached google_auth-2.23.4-py2.py3-none-any.whl.metadata (4.7 kB) Collecting google-auth-oauthlib<1.1,>=0.5 (from tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached google_auth_oauthlib-1.0.0-py2.py3-none-any.whl (18 kB) Collecting markdown>=2.6.8 (from tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached Markdown-3.5.1-py3-none-any.whl.metadata (7.1 kB) Collecting tensorboard-data-server<0.8.0,>=0.7.0 (from tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached tensorboard_data_server-0.7.2-py3-none-any.whl.metadata (1.1 kB) Collecting werkzeug>=1.0.1 (from tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached werkzeug-3.0.1-py3-none-any.whl.metadata (4.1 kB) Collecting cachetools<6.0,>=2.0.0 (from google-auth<3,>=1.6.3->tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached cachetools-5.3.2-py3-none-any.whl.metadata (5.2 kB) Collecting pyasn1-modules>=0.2.1 (from google-auth<3,>=1.6.3->tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached pyasn1_modules-0.3.0-py2.py3-none-any.whl (181 kB) Collecting rsa<5,>=3.1.4 (from google-auth<3,>=1.6.3->tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached rsa-4.9-py3-none-any.whl (34 kB) Collecting requests-oauthlib>=0.7.0 (from google-auth-oauthlib<1.1,>=0.5->tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB) Collecting pyasn1<0.6.0,>=0.4.6 (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached pyasn1-0.5.0-py2.py3-none-any.whl (83 kB) Collecting oauthlib>=3.0.0 (from requests-oauthlib>=0.7.0->google-auth-oauthlib<1.1,>=0.5->tensorboard<2.15,>=2.14->tensorflow-macos==2.14.0->tensorflow->LabGym) Using cached oauthlib-3.2.2-py3-none-any.whl (151 kB) Using cached matplotlib-3.8.1-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB) Using cached opencv_contrib_python-4.8.1.78-cp37-abi3-macosx_11_0_arm64.whl (41.4 MB) Using cached opencv_python-4.8.1.78-cp37-abi3-macosx_11_0_arm64.whl (33.1 MB) Using cached pandas-2.1.2-cp310-cp310-macosx_11_0_arm64.whl (10.9 MB) Using cached scikit_image-0.22.0-cp310-cp310-macosx_12_0_arm64.whl (13.3 MB) Using cached scikit_learn-1.3.2-cp310-cp310-macosx_12_0_arm64.whl (9.5 MB) Using cached scikit_posthocs-0.8.0-py3-none-any.whl (32 kB) Using cached seaborn-0.13.0-py3-none-any.whl (294 kB) Using cached tensorflow-2.14.0-cp310-cp310-macosx_12_0_arm64.whl (2.1 kB) Using cached tensorflow_macos-2.14.0-cp310-cp310-macosx_12_0_arm64.whl (199.7 MB) Using cached ml_dtypes-0.2.0-cp310-cp310-macosx_10_9_universal2.whl (1.2 MB) Using cached torch-2.1.0-cp310-none-macosx_11_0_arm64.whl (59.5 MB) Using cached torchvision-0.16.0-cp310-cp310-macosx_11_0_arm64.whl (1.6 MB) Using cached wxPython-4.2.1-cp310-cp310-macosx_10_10_universal2.whl (31.5 MB) Using cached XlsxWriter-3.1.9-py3-none-any.whl (154 kB) Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl (242 kB) Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) Using cached fonttools-4.44.0-cp310-cp310-macosx_10_9_universal2.whl (2.7 MB) Using cached imageio-2.32.0-py3-none-any.whl (313 kB) Using cached joblib-1.3.2-py3-none-any.whl (302 kB) Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) Using cached lazy_loader-0.3-py3-none-any.whl (9.1 kB) Using cached networkx-3.2.1-py3-none-any.whl (1.6 MB) Using cached numpy-1.26.1-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) Using cached packaging-23.2-py3-none-any.whl (53 kB) Using cached Pillow-10.0.1-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB) Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB) Using cached pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) Using cached scipy-1.11.3-cp310-cp310-macosx_12_0_arm64.whl (29.8 MB) Using cached threadpoolctl-3.2.0-py3-none-any.whl (15 kB) Using cached tifffile-2023.9.26-py3-none-any.whl (222 kB) Using cached typing_extensions-4.8.0-py3-none-any.whl (31 kB) Using cached filelock-3.13.1-py3-none-any.whl (11 kB) Using cached fsspec-2023.10.0-py3-none-any.whl (166 kB) Using cached requests-2.31.0-py3-none-any.whl (62 kB) Using cached absl_py-2.0.0-py3-none-any.whl (130 kB) Using cached certifi-2023.7.22-py3-none-any.whl (158 kB) Using cached charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl (120 kB) Using cached flatbuffers-23.5.26-py2.py3-none-any.whl (26 kB) Using cached grpcio-1.59.2-cp310-cp310-macosx_12_0_universal2.whl (9.5 MB) Using cached h5py-3.10.0-cp310-cp310-macosx_11_0_arm64.whl (2.7 MB) Using cached keras-2.14.0-py3-none-any.whl (1.7 MB) Using cached libclang-16.0.6-py2.py3-none-macosx_11_0_arm64.whl (20.6 MB) Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl (17 kB) Using cached protobuf-4.25.0-cp37-abi3-macosx_10_9_universal2.whl (393 kB) Using cached tensorboard-2.14.1-py3-none-any.whl (5.5 MB) Using cached tensorflow_estimator-2.14.0-py2.py3-none-any.whl (440 kB) Using cached tensorflow_io_gcs_filesystem-0.34.0-cp310-cp310-macosx_12_0_arm64.whl (1.9 MB) Using cached urllib3-2.0.7-py3-none-any.whl (124 kB) Using cached google_auth-2.23.4-py2.py3-none-any.whl (183 kB) Using cached Markdown-3.5.1-py3-none-any.whl (102 kB) Using cached tensorboard_data_server-0.7.2-py3-none-any.whl (2.4 kB) Using cached werkzeug-3.0.1-py3-none-any.whl (226 kB) Using cached cachetools-5.3.2-py3-none-any.whl (9.3 kB) Installing collected packages: pytz, pathlib, mpmath, libclang, flatbuffers, xlsxwriter, wrapt, urllib3, tzdata, typing-extensions, threadpoolctl, termcolor, tensorflow-io-gcs-filesystem, tensorflow-estimator, tensorboard-data-server, sympy, six, pyparsing, pyasn1, protobuf, pillow, packaging, oauthlib, numpy, networkx, MarkupSafe, markdown, lazy_loader, kiwisolver, keras, joblib, idna, grpcio, gast, fsspec, fonttools, filelock, et-xmlfile, cycler, charset-normalizer, certifi, cachetools, absl-py, wxPython, werkzeug, tifffile, scipy, rsa, requests, python-dateutil, pyasn1-modules, patsy, opt-einsum, openpyxl, opencv-python, opencv-contrib-python, ml-dtypes, jinja2, imageio, h5py, google-pasta, contourpy, astunparse, torch, scikit-learn, scikit-image, requests-oauthlib, pandas, matplotlib, google-auth, torchvision, statsmodels, seaborn, google-auth-oauthlib, tensorboard, scikit-posthocs, tensorflow-macos, tensorflow, LabGym Successfully installed LabGym-2.2.2 MarkupSafe-2.1.3 absl-py-2.0.0 astunparse-1.6.3 cachetools-5.3.2 certifi-2023.7.22 charset-normalizer-3.3.2 contourpy-1.2.0 cycler-0.12.1 et-xmlfile-1.1.0 filelock-3.13.1 flatbuffers-23.5.26 fonttools-4.44.0 fsspec-2023.10.0 gast-0.5.4 google-auth-2.23.4 google-auth-oauthlib-1.0.0 google-pasta-0.2.0 grpcio-1.59.2 h5py-3.10.0 idna-3.4 imageio-2.32.0 jinja2-3.1.2 joblib-1.3.2 keras-2.14.0 kiwisolver-1.4.5 lazy_loader-0.3 libclang-16.0.6 markdown-3.5.1 matplotlib-3.8.1 ml-dtypes-0.2.0 mpmath-1.3.0 networkx-3.2.1 numpy-1.26.1 oauthlib-3.2.2 opencv-contrib-python-4.8.1.78 opencv-python-4.8.1.78 openpyxl-3.1.2 opt-einsum-3.3.0 packaging-23.2 pandas-2.1.2 pathlib-1.0.1 patsy-0.5.3 pillow-10.0.1 protobuf-4.25.0 pyasn1-0.5.0 pyasn1-modules-0.3.0 pyparsing-3.1.1 python-dateutil-2.8.2 pytz-2023.3.post1 requests-2.31.0 requests-oauthlib-1.3.1 rsa-4.9 scikit-image-0.22.0 scikit-learn-1.3.2 scikit-posthocs-0.8.0 scipy-1.11.3 seaborn-0.13.0 six-1.16.0 statsmodels-0.14.0 sympy-1.12 tensorboard-2.14.1 tensorboard-data-server-0.7.2 tensorflow-2.14.0 tensorflow-estimator-2.14.0 tensorflow-io-gcs-filesystem-0.34.0 tensorflow-macos-2.14.0 termcolor-2.3.0 threadpoolctl-3.2.0 tifffile-2023.9.26 torch-2.1.0 torchvision-0.16.0 typing-extensions-4.8.0 tzdata-2023.3 urllib3-2.0.7 werkzeug-3.0.1 wrapt-1.14.1 wxPython-4.2.1 xlsxwriter-3.1.9 (labgym) karinmorandell@karins-mbp-2 ~ % python3 -m LabGym
/Users/karinmorandell/miniconda3/envs/labgym/bin/python3: No module named LabGym.main; 'LabGym' is a package and cannot be directly executed (labgym) karinmorandell@karins-mbp-2 ~ % python3 -m LabGym

yujiahu415 commented 10 months ago

Hi,

The issue you encountered may be caused by the new instruction for initiating LabGym with command 'python3 -m LabGym'. We have been still testing this but haven't officially implemented in the LabGym release. Sorry for the confusion and I have fixed the instruction. For now, please still use 'python3' to activate python shell and then type 'from LabGym import gui' and 'gui.gui()' to initiate LabGym user interface. Thanks and apologies for the confusion again!