search

underworldcode / underworld2

underworld2: A parallel, particle-in-cell, finite element code for Geodynamics.
http://www.underworldcode.org/
Other
176 stars 59 forks source link

glucifer on raijin #396

Closed julesghub closed 5 years ago

julesghub commented 5 years ago

@OKaluza i'm doing some testing on raijin. I found some glucifer/lavavu errors cropping. Whenever show() is called something like this appears:

X11 Error: 179 -> GLXBadFBConfig
In func createWindow: Could not create GLX rendering context.
No context!

LavaVu Run error: No context!

and at the end of execution something like this appears:

X11 Error: 8 -> BadMatch (invalid parameter attributes)
X11 Error: 8 -> BadMatch (invalid parameter attributes)
X11 Error: 179 -> GLXBadFBConfig
In func createWindow: Could not create GLX rendering context.
No context!

Exception in thread Thread-2:
Traceback (most recent call last):
  File "/apps/python3/3.6.7/lib/python3.6/threading.py", line 916, in _bootstrap_inner
    self.run()
  File "/apps/python3/3.6.7/lib/python3.6/threading.py", line 864, in run
    self._target(*self._args, **self._kwargs)
  File "/home/565/jug565/.local/lib/python3.6/site-packages/lavavu/lavavu.py", line 2174, in _thread_run
    viewer.app._thread_run()
  File "/home/565/jug565/.local/lib/python3.6/site-packages/lavavu/lavavu.py", line 2016, in _thread_run
    self._returned = method(*args, **kwargs)
RuntimeError: No context!

I have tried with and without GLUCIFER_USE_XFVB=1

any suggestions on this?

OKaluza commented 5 years ago

Is LavaVu linked with a working Mesa llvmpipe libGL.so? You can't just use the system libGL on raijin, it's ancient. eg, for my mesa build: 

export OPENGL_LIB=/home/565/olk565/mesa-17.1.5/build/linux-x86_64/gallium/targets/libgl-xlib/
export OPENGL_INC=/home/565/olk565/mesa-17.1.5/include/GL

I used to have a shared mesa build but I seemed to lose access to the uw project dir, so yeah not anymore.

I remember having lots of problems with Xvfb on raijin, I think I gave up and used turbovnc at one point: https://github.com/OKaluza/LavaVu/wiki/NCI-Raijin-Build

julesghub commented 5 years ago

Sweet, thanks for the info. I'll give it a try and report back.

OKaluza commented 5 years ago

If you can add me back to the underworld project I'm happy to make a new shared mesa build for this.

julesghub commented 5 years ago

yep good thinking - @lmoresi can you make that happen?

lmoresi commented 5 years ago

Owen is a member … I don’t remember uninviting him but perhaps something needs to be different about the membership of particular teams.

Happy to fix whatever is needed.

Prof Louis Moresi

louis.moresi@unimelb.edu.aumailto:louis.moresi@unimelb.edu.au

(w) +61 3 8344 1217

(m) +61 4 0333 1413

(us) +1 505 349 4425

www.moresi.infohttp://www.moresi.info/

www.facebook.com/underworldcodehttp://www.facebook.com/underworldcode

@LouisMoresihttps://twitter.com/LouisMoresi

On 28 Jun 2019, 3:43 PM +1000, Julian Giordani notifications@github.com, wrote:

yep good thinking - @lmoresihttps://github.com/lmoresi can you make that happen?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/underworldcode/underworld2/issues/396?email_source=notifications&email_token=ADABPI7C4NKOFYXYENXP453P4WQHJA5CNFSM4H4CBZAKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODYZDZCA#issuecomment-506608776, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ADABPI4PLPCIAYZ6JJYQIK3P4WQHJANCNFSM4H4CBZAA.

lmoresi commented 5 years ago

Also, Julian, you are an owner so …

Prof Louis Moresi

louis.moresi@unimelb.edu.aumailto:louis.moresi@unimelb.edu.au

(w) +61 3 8344 1217

(m) +61 4 0333 1413

(us) +1 505 349 4425

www.moresi.infohttp://www.moresi.info/

www.facebook.com/underworldcodehttp://www.facebook.com/underworldcode

@LouisMoresihttps://twitter.com/LouisMoresi

On 28 Jun 2019, 3:43 PM +1000, Julian Giordani notifications@github.com, wrote:

yep good thinking - @lmoresihttps://github.com/lmoresi can you make that happen?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/underworldcode/underworld2/issues/396?email_source=notifications&email_token=ADABPI7C4NKOFYXYENXP453P4WQHJA5CNFSM4H4CBZAKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODYZDZCA#issuecomment-506608776, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ADABPI4PLPCIAYZ6JJYQIK3P4WQHJANCNFSM4H4CBZAA.

OKaluza commented 5 years ago

Ah, not sure what's missing but I'm in these groups, I think p67 is the old project? Anyway I have no access to /projects/Underworld (/short/m18/projects) do I need to join m18?

bash-4.1$ groups
p67 Monash underworld
bash-4.1$ ls -l /projects/Underworld/
ls: cannot access /projects/Underworld/: Permission denied
bash-4.1$ ls -l /projects
total 12
lrwxrwxrwx   1 root   root           19 Feb  5  2018 UQ_Hypersonics -> /short/n23/projects
lrwxrwxrwx   1 root   root           19 Feb  8  2018 Underworld -> /short/m18/projects
drwxrwxr-x+ 29 ccc561 wrf          4096 Nov 16  2018 WRF
drwxrwsr-x+ 38 access access.admin 4096 Apr  3 09:59 access
drwxr-xr-x   5 root   root         4096 Feb  9  2018 data
lrwxrwxrwx   1 root   root           19 Jan 25  2018 u46 -> /short/u46/projects
lrwxrwxrwx   1 root   root           19 Jan 25  2018 v10 -> /short/v10/projects
lrwxrwxrwx   1 root   root           19 Feb  7  2018 v45 -> /short/v45/projects
OKaluza commented 5 years ago

Although now that I think about it, I guess I can just put the build on /short/p67 and set the group access to "underworld"... I'll give it a try

lmoresi commented 5 years ago

Oh - that underworld project !

I am not sure. Request access to all the relevant projects via Mancini

Prof Louis Moresi

louis.moresi@unimelb.edu.aumailto:louis.moresi@unimelb.edu.au

(w) +61 3 8344 1217

(m) +61 4 0333 1413

(us) +1 505 349 4425

www.moresi.infohttp://www.moresi.info/

www.facebook.com/underworldcodehttp://www.facebook.com/underworldcode

@LouisMoresihttps://twitter.com/LouisMoresi

On 29 Jun 2019, 12:20 +1000, Owen Kaluza notifications@github.com, wrote:

Although now that I think about it, I guess I can just put the build on /short/p67 and set the group access to "underworld"... I'll give it a try

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/underworldcode/underworld2/issues/396?email_source=notifications&email_token=ADABPI4O45FEJMAUSMEUJK3P43BHTA5CNFSM4H4CBZAKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODY3PR5Y#issuecomment-506919159, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ADABPI4G4YDPH2DSSXENOVLP43BHTANCNFSM4H4CBZAA.

julesghub commented 5 years ago

Closing this issue. raijin's OSMesa is now running with the 2.8 rc.

ZhiqYu commented 3 years ago

@julesghub Hello, now I have the same problem when RUNNING underworld code on HPC. Have you solved this problem? I want to continue to ask you for specific solutions.

julesghub commented 3 years ago

@ZhiqYu what exactly is the problems you're having with Underowrld on HPC. Do you have an error log? Which machine are you running on?

This ticket is quite old - gLucifer has changed significantly and the HPC "raijin" is no longer operational. Can you open a new ticket with more information and the error log. Thanks.