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underworldcode / underworld2

underworld2: A parallel, particle-in-cell, finite element code for Geodynamics.
http://www.underworldcode.org/
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setup build error #602

Closed lsli0116 closed 2 years ago

lsli0116 commented 2 years ago

Hi everyone,

I get the v2.12.2b.tar.gz from Releases, unzip and cdin it. Then I use the command ./setup.py build and get the following error:

-- Found SWIG: /home/lsli/software/swig-4.0.2/bin/swig (found suitable version "4.0.2", minimum required is "4.0") found components: python -- >>> Linux System -- Found SWIG: /home/lsli/software/swig-4.0.2/bin/swig (found version "4.0.2") -- >>> Linux System -- Configuring done -- Generating done -- Build files have been written to: /home/lsli/downloads/underworld2-2.12.2b/build/temp.linux-x86_64-3.8_libUnderworld [1/195] Building CXX object CMakeFiles/PICellerator.dir/PICellerator/MaterialPoints/src/GeneralSwarm.cpp.o FAILED: CMakeFiles/PICellerator.dir/PICellerator/MaterialPoints/src/GeneralSwarm.cpp.o /usr/bin/c++ -DCURR_MODULE_NAME=\"PICellerator\" -DLIB_DIR=\".\" -DMODULE_EXT=\".so\" -DPICellerator_EXPORTS -I/usr/include/libxml2 -I/home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld -isystem /opt/miniconda3/envs/uw/include/python3.8 -isystem /opt/miniconda3/envs/uw/lib/python3.8/site-packages/numpy/core/include -isystem /home/lsli/software/openmpi-4.1.2/include -isystem /home/lsli/software/openmpi-4.1.2/include/openmpi -O3 -DNDEBUG -fPIC -DU_SHOW_CPLUSPLUS_API=0 -std=gnu++11 -MD -MT CMakeFiles/PICellerator.dir/PICellerator/MaterialPoints/src/GeneralSwarm.cpp.o -MF CMakeFiles/PICellerator.dir/PICellerator/MaterialPoints/src/GeneralSwarm.cpp.o.d -o CMakeFiles/PICellerator.dir/PICellerator/MaterialPoints/src/GeneralSwarm.cpp.o -c /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/MaterialPoints/src/GeneralSwarm.cpp /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/MaterialPoints/src/GeneralSwarm.cpp:16:10: fatal error: petsc.h: No such file or directory 16 | #include | ^~~~~ compilation terminated. [9/195] Building C object CMakeFiles/PICellerator.dir/PICellerator/Utils/src/PCDVC.c.o /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c: In function ‘_PCDVC_Calculate3D’: /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:369:36: warning: passing argument 3 of ‘PCDVC_Firewall’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 369 | PCDVC_Firewall( nump, lCell_I, func ); | ^~~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:50:51: note: expected ‘char ’ but argument is of type ‘const char ’ 50 | void PCDVC_Firewall( int nump, int lCell_I, char funcguy ) | ~~^~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:515:48: warning: passing argument 3 of ‘PCDVC_Firewall’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 515 | PCDVC_Firewall( nump, lCell_I, func ); | ^~~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:50:51: note: expected ‘char ’ but argument is of type ‘const char ’ 50 | void PCDVC_Firewall( int nump, int lCell_I, char funcguy ) | ~~^~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:650:44: warning: passing argument 3 of ‘PCDVC_Firewall’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 650 | PCDVC_Firewall( nump, lCell_I, func ); | ^~~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:50:51: note: expected ‘char ’ but argument is of type ‘const char ’ 50 | void PCDVC_Firewall( int nump, int lCell_I, char funcguy ) | ~~^~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c: In function ‘_PCDVC_Calculate2D’: /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:754:36: warning: passing argument 3 of ‘PCDVC_Firewall’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 754 | PCDVC_Firewall( nump, lCell_I, func ); | ^~~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:50:51: note: expected ‘char ’ but argument is of type ‘const char ’ 50 | void PCDVC_Firewall( int nump, int lCell_I, char funcguy ) | ~~^~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:898:48: warning: passing argument 3 of ‘PCDVC_Firewall’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 898 | PCDVC_Firewall( nump, lCell_I, func ); | ^~~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:50:51: note: expected ‘char ’ but argument is of type ‘const char ’ 50 | void PCDVC_Firewall( int nump, int lCell_I, char funcguy ) | ~~^~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:1029:44: warning: passing argument 3 of ‘PCDVC_Firewall’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1029 | PCDVC_Firewall( nump, lCell_I, func ); | ^~~~ /home/lsli/downloads/underworld2-2.12.2b/underworld/libUnderworld/PICellerator/Utils/src/PCDVC.c:50:51: note: expected ‘char ’ but argument is of type ‘const char ’ 50 | void PCDVC_Firewall( int nump, int lCell_I, char funcguy ) | ~~^~~ [10/195] Building C object CMakeFiles/PICellerator.dir/PICellerator/Weights/src/DVCWeights.c.o ninja: build stopped: subcommand failed. Traceback (most recent call last): File "./setup.py", line 289, in setup(name='underworld', File "/opt/miniconda3/envs/uw/lib/python3.8/site-packages/setuptools/init.py", line 153, in setup return distutils.core.setup(**attrs) File "/opt/miniconda3/envs/uw/lib/python3.8/distutils/core.py", line 148, in setup dist.run_commands() File "/opt/miniconda3/envs/uw/lib/python3.8/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/opt/miniconda3/envs/uw/lib/python3.8/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/opt/miniconda3/envs/uw/lib/python3.8/distutils/command/build.py", line 135, in run self.run_command(cmd_name) File "/opt/miniconda3/envs/uw/lib/python3.8/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/opt/miniconda3/envs/uw/lib/python3.8/distutils/dist.py", line 985, in run_command cmd_obj.run() File "./setup.py", line 138, in run self.build_extension(ext) File "./setup.py", line 245, in build_extension subprocess.check_call(build_command) File "/opt/miniconda3/envs/uw/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '--build', '/home/lsli/downloads/underworld2-2.12.2b/build/temp.linux-x86_64-3.8_libUnderworld', '--config', 'Release']' returned non-zero exit status 1.

Thanks in advance.

lsli0116 commented 2 years ago

I find the solution.