Open mhorlacher opened 4 years ago
In my opinion, the problems starts in the cmake output:
Cannot generate a safe runtime search path for target gerbil because files
in some directories may conflict with libraries in implicit directories:
runtime library [libz.so.1] in /usr/lib64 may be hidden by files in:
/home/icb/marc.horlacher/miniconda3/envs/gerbil/lib
Some of these libraries may not be found correctly.
It seems that the directory minconda3/envs/gerbil/lib is hiding essential system libraries, which can afterwards not be found during the linking process.
Unfortunately, I do not know how to fix this problem as I have no experience with conda environments. May this thread be helpful?
Thanks for taking your time @srechner , masking the system paths was intentional as I'm not super-user on our servers and couldn't install the required libraries otherwise. I still couldn't figure out how to solve the above problem, it probably due to the server running on Redhat..
Anyways, I've managed to statically compile Gerbil locally and can now use it on our servers without any problems!
My
cmake ..
output:And my
make
output:What's going wrong here?