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unige-geohealth / inAccessMod

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failing auto-tests cases (JOSS review) #5

Closed mponce0 closed 9 months ago

mponce0 commented 9 months ago

The "Automated Tests Cases" are failing. See details below,

> devtools::test()
ℹ Testing inAccessMod
✔ | F W  S  OK | Context
⠏ |          0 | 01-initiate_project                                                                                                                            /tmp/RtmpoV3Hm9/Syria/data
├── config.txt
├── log.txt
├── rDEM
├── rLandcover
├── rPopulation
├── vBorders
├── vFacilities
├── vNaturalPolygons
├── vRoads
└── vWaterLines

✖ | 2        1 | 01-initiate_project
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Failure (test-01-initiate_project.R:5:3): test initiate_project
file.exists(file.path(temp_dir, country, "data", "config.txt")) is not TRUE

`actual`:   FALSE
`expected`: TRUE

Failure (test-01-initiate_project.R:6:3): test initiate_project
file.exists(file.path(temp_dir, country, "data", "log.txt")) is not TRUE

`actual`:   FALSE
`expected`: TRUE
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 02-download_boundaries
✖ | 1        0 | 02-download_boundaries
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-02-download_boundaries.R:2:3): test download_boundaries
Error in `check_exists(pathBorder, "raw")`: /tmp/RtmpoV3Hm9/Switzerland/data/vBorders does not exist. Run the initiate_project function first or check the inputparameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-02-download_boundaries.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_boundaries(...)
5.   └─inAccessMod::check_exists(pathBorder, "raw") at inAccessMod/R/download_boundaries.R:49:3
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 03-set_projection
✖ | 1 1      0 | 03-set_projection
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Warning (test-03-set_projection.R:2:3): test set_projection
cannot open file '/tmp/RtmpoV3Hm9/Switzerland/data/config.txt': No such file or directory
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-03-set_projection.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::set_projection(...)
5.   └─base::file(...) at inAccessMod/R/set_projection.R:43:3

Error (test-03-set_projection.R:2:3): test set_projection
Error in `file(file.path(mainPath, country, "data", "config.txt"), open = "r")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-03-set_projection.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::set_projection(...)
5.   └─base::file(...) at inAccessMod/R/set_projection.R:43:3
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 04-download_population
✖ | 1        0 | 04-download_population
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-04-download_population.R:2:3): test download_population
Error in `check_exists(pathPop, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/rPopulation does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-04-download_population.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_population(...)
5.   └─inAccessMod::check_exists(pathPop, "raw", layer = TRUE) at inAccessMod/R/download_population.R:36:3
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 05-download_dem
✖ | 1        0 | 05-download_dem
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-05-download_dem.R:2:3): test download_dem
Error in `check_exists(pathDEM, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/rDEM does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-05-download_dem.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_dem(...)
5.   └─inAccessMod::check_exists(pathDEM, "raw", layer = TRUE) at inAccessMod/R/download_dem.R:42:3
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 06-download_landcover
✖ | 1        0 | 06-download_landcover
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-06-download_landcover.R:2:3): test download_landcover
Error in `check_exists(pathLandcover, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/rLandcover does not exist. Run the initiate_project function firstor check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-06-download_landcover.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_landcover(...)
5.   └─inAccessMod::check_exists(pathLandcover, "raw", layer = TRUE) at inAccessMod/R/download_landcover.R:41:3
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 07-download_osm
✖ | 1        0 | 07-download_osm
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-07-download_osm.R:2:3): test download_osm
Error in `check_exists(pathFolder, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/vRoads does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-07-download_osm.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_osm(...)
5.   └─inAccessMod::check_exists(pathFolder, "raw", layer = TRUE) at inAccessMod/R/download_osm.R:61:3
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 08-HeRAMS_filter_hf
HeRAMS tables: OK

✖ | 1        0 | 08-HeRAMS_filter_hf
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-08-HeRAMS_filter_hf.R:2:3): test HeRAMS_filter_hf
Error in `HeRAMS_filter_hf(temp_dir, country, pathTableCode = NULL, pathTableText = NULL,
scenario = NULL, mostRecentObs = TRUE, defaultParameters = TRUE,
region = FALSE, type = FALSE, ownership = FALSE, status = FALSE,
building = FALSE, equipment = FALSE, functionality = FALSE,
accessibility = FALSE, support = FALSE, services = FALSE,
partners = FALSE, barriers = FALSE, testMode = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/vFacilities  does not exist. Run the initiate_project function.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-08-HeRAMS_filter_hf.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::HeRAMS_filter_hf(...)
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
⠏ |          0 | 09-HeRAMS_create_hf_shapefile
✖ | 1        0 | 09-HeRAMS_create_hf_shapefile
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-09-HeRAMS_create_hf_shapefile.R:2:34): test HeRAMS-create_hf_shapefile
Error in `HeRAMS_create_hf_shapefile(temp_dir, country, mostRecentBoundaries = TRUE,
rmNA = TRUE, rmOut = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/vFacilities  does not exist. Run the initiate_project function.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-09-HeRAMS_create_hf_shapefile.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. └─inAccessMod::HeRAMS_create_hf_shapefile(...) at test-09-HeRAMS_create_hf_shapefile.R:2:34
────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Maximum number of failures exceeded; quitting at end of file.
ℹ Increase this number with (e.g.) `testthat::set_max_fails(Inf)`

══ Results ═════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════
── Failed tests ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Failure (test-01-initiate_project.R:5:3): test initiate_project
file.exists(file.path(temp_dir, country, "data", "config.txt")) is not TRUE

`actual`:   FALSE
`expected`: TRUE

Failure (test-01-initiate_project.R:6:3): test initiate_project
file.exists(file.path(temp_dir, country, "data", "log.txt")) is not TRUE

`actual`:   FALSE
`expected`: TRUE

Error (test-02-download_boundaries.R:2:3): test download_boundaries
Error in `check_exists(pathBorder, "raw")`: /tmp/RtmpoV3Hm9/Switzerland/data/vBorders does not exist. Run the initiate_project function first or check the inputparameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-02-download_boundaries.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_boundaries(...)
5.   └─inAccessMod::check_exists(pathBorder, "raw") at inAccessMod/R/download_boundaries.R:49:3

Error (test-03-set_projection.R:2:3): test set_projection
Error in `file(file.path(mainPath, country, "data", "config.txt"), open = "r")`: cannot open the connection
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-03-set_projection.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::set_projection(...)
5.   └─base::file(...) at inAccessMod/R/set_projection.R:43:3

Error (test-04-download_population.R:2:3): test download_population
Error in `check_exists(pathPop, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/rPopulation does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-04-download_population.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_population(...)
5.   └─inAccessMod::check_exists(pathPop, "raw", layer = TRUE) at inAccessMod/R/download_population.R:36:3

Error (test-05-download_dem.R:2:3): test download_dem
Error in `check_exists(pathDEM, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/rDEM does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-05-download_dem.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_dem(...)
5.   └─inAccessMod::check_exists(pathDEM, "raw", layer = TRUE) at inAccessMod/R/download_dem.R:42:3

Error (test-06-download_landcover.R:2:3): test download_landcover
Error in `check_exists(pathLandcover, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/rLandcover does not exist. Run the initiate_project function firstor check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-06-download_landcover.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_landcover(...)
5.   └─inAccessMod::check_exists(pathLandcover, "raw", layer = TRUE) at inAccessMod/R/download_landcover.R:41:3

Error (test-07-download_osm.R:2:3): test download_osm
Error in `check_exists(pathFolder, "raw", layer = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/vRoads does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-07-download_osm.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_osm(...)
5.   └─inAccessMod::check_exists(pathFolder, "raw", layer = TRUE) at inAccessMod/R/download_osm.R:61:3

Error (test-08-HeRAMS_filter_hf.R:2:3): test HeRAMS_filter_hf
Error in `HeRAMS_filter_hf(temp_dir, country, pathTableCode = NULL, pathTableText = NULL,
scenario = NULL, mostRecentObs = TRUE, defaultParameters = TRUE,
region = FALSE, type = FALSE, ownership = FALSE, status = FALSE,
building = FALSE, equipment = FALSE, functionality = FALSE,
accessibility = FALSE, support = FALSE, services = FALSE,
partners = FALSE, barriers = FALSE, testMode = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/vFacilities  does not exist. Run the initiate_project function.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-08-HeRAMS_filter_hf.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::HeRAMS_filter_hf(...)

Error (test-09-HeRAMS_create_hf_shapefile.R:2:34): test HeRAMS-create_hf_shapefile
Error in `HeRAMS_create_hf_shapefile(temp_dir, country, mostRecentBoundaries = TRUE,
rmNA = TRUE, rmOut = TRUE)`: /tmp/RtmpoV3Hm9/Switzerland/data/vFacilities  does not exist. Run the initiate_project function.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-09-HeRAMS_create_hf_shapefile.R:2:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. └─inAccessMod::HeRAMS_create_hf_shapefile(...) at test-09-HeRAMS_create_hf_shapefile.R:2:34

[ FAIL 10 | WARN 1 | SKIP 0 | PASS 1 ]
══ Terminated early ════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════
>

Details about the R environment,

> sessionInfo()
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0

locale:
[1] LC_CTYPE=en_CA.UTF-8       LC_NUMERIC=C
[3] LC_TIME=en_CA.UTF-8        LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8    LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=en_CA.UTF-8       LC_NAME=C
[9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C

time zone: America/Toronto
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] inAccessMod_1.0 testthat_3.2.1

loaded via a namespace (and not attached):
[1] DBI_1.1.3               bitops_1.0-7            geodata_0.5-9
[4] remotes_2.4.2.1         writexl_1.4.2           rematch2_2.1.2
[7] readxl_1.4.3            rlang_1.1.2             magrittr_2.0.3
[10] e1071_1.7-14            compiler_4.3.2          png_0.1-8
[13] callr_3.7.3             vctrs_0.6.5             stringr_1.5.1
[16] profvis_0.3.8           httpcode_0.3.0          pkgconfig_2.0.3
[19] crayon_1.5.2            fastmap_1.1.1           ellipsis_0.3.2
[22] leafem_0.2.3            utf8_1.2.4              promises_1.2.1
[25] rmarkdown_2.25          sessioninfo_1.2.2       ps_1.7.5
[28] purrr_1.0.2             waldo_0.5.2             xfun_0.41
[31] satellite_1.0.4         cachem_1.0.8            jsonlite_1.8.8
[34] later_1.3.2             mapview_2.11.2          terra_1.7-55
[37] prettyunits_1.2.0       R6_2.5.1                stringi_1.8.2
[40] hoardr_0.5.3            pkgload_1.3.3           brio_1.1.3
[43] lubridate_1.9.3         cellranger_1.1.0        Rcpp_1.0.11
[46] rgeoboundaries_1.2.9000 knitr_1.45              usethis_2.2.2
[49] base64enc_0.1-3         httpuv_1.6.13           timechange_0.2.0
[52] tidyselect_1.2.0        rstudioapi_0.15.0       codetools_0.2-18
[55] miniUI_0.1.1.1          curl_5.1.0              processx_3.8.2
[58] osmextract_0.5.0        pkgbuild_1.4.2          crsuggest_0.4
[61] lattice_0.20-45         tibble_3.2.1            shiny_1.8.0
[64] withr_2.5.2             evaluate_0.23           desc_1.4.2
[67] sf_1.0-14               units_0.8-5             proxy_0.4-27
[70] urlchecker_1.0.1        exactextractr_0.10.0    pillar_1.9.0
[73] KernSmooth_2.23-20      stats4_4.3.2            generics_0.1.3
[76] rprojroot_2.0.4         sp_2.1-2                RCurl_1.98-1.13
[79] munsell_0.5.0           scales_1.3.0            xtable_1.8-4
[82] class_7.3-20            glue_1.6.2              tools_4.3.2
[85] diffobj_0.3.5           data.table_1.14.8       fs_1.6.3
[88] grid_4.3.2              crosstalk_1.2.1         devtools_2.4.5
[91] colorspace_2.1-0        raster_3.6-26           cli_3.6.1
[94] rappdirs_0.3.3          fasterize_1.0.5         fansi_1.0.5
[97] dplyr_1.1.4             countrycode_1.5.0       digest_0.6.33
[100] classInt_0.4-10         crul_1.4.0              htmlwidgets_1.6.4
[103] memoise_2.0.1           htmltools_0.5.7         lifecycle_1.0.4
[106] leaflet_2.2.1           httr_1.4.7              mime_0.12
>

https://github.com/openjournals/joss-reviews/issues/5879

ptimoner commented 9 months ago

Hi @mponce0,

Thank you very much for pointing out this issue. Because of the sequential nature of the process, as the first function failed, all the other functions failed as well. The automatic selection of the country index in the "initiate_project" function in test mode was not consistent with the country used for testing (maybe due to different version of the "countrycode" dependency). I slightly modified the code to avoid this potential inconsistency.

Let me know if you still experience an error, and if not, would you please close this issue ?

Thanks again,

Best regards,

Pablo

mponce0 commented 9 months ago

Thanks this fixed most of the issues, however there is one test still failing in Linux systems: test #7

── Failed tests ───────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-07-download_osm.R:6:3): test download_osm
Error in `check_exists(pathFolder, "raw", layer = TRUE)`: /tmp/RtmpAlQR50/Switzerland/data/vWaterlines does not exist. Run the initiate_project function first or check the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-07-download_osm.R:6:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_osm(...)
5.   └─inAccessMod::check_exists(pathFolder, "raw", layer = TRUE) at inAccessMod/R/download_osm.R:61:3

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]

Actually if you look into the data directory you will see the problem:

> system("ls  /tmp/RtmpAlQR50/Switzerland/data/")
config.txt  rDEM        rPopulation  vFacilities       vRoads       zToAccessMod
log.txt     rLandcover  vBorders     vNaturalPolygons  vWaterLines

The issue is that somehow the R code refers to "vWaterlines" (notice the lower case "l") vs the "vWaterLines" (capital case "L") in the directories names. BTW this does not happen in MacOS as it is not case sensitive, i.e. in MacOS all the tests cases are passing but not in case-sensitive OSes, such as, Linux.

Looking into your initiate_project.R module, there are a couple of things that could fix this by switching to "vWaterlines", as well as, "vNaturalpolygons" (for similar reasons).

I just created a pull-request for you to review with the changes, which I believe will fix this issue.

ptimoner commented 9 months ago

Thanks a lot Marcelo.

As explained here https://github.com/unige-geohealth/inAccessMod/pull/6#issuecomment-1848641079, as we had the word "waterLines" in multiple places in the package (especially in code examples), we finally decided to modify the line in download_osm that was causing the issue without the need of replacing "waterLines" by "waterlines" everywhere.

It might work now.

Best regards.

mponce0 commented 9 months ago

Sorry, but it is failing with the same error if I try the current version from the repository.

── Failed tests ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Error (test-07-download_osm.R:6:3): test download_osm
Error in `check_exists(pathFolder, "raw", layer = TRUE)`: /tmp/Rtmp344lKk/Switzerland/data/vWaterlines does not exist. Run the initiate_project function first orcheck the input parameters.
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-07-download_osm.R:6:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inAccessMod::download_osm(...)
5.   └─inAccessMod::check_exists(pathFolder, "raw", layer = TRUE) at inAccessMod/R/download_osm.R:61:3

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]

and data directory appears to be unchanged in terms of sub-directories names"

> system('ls  /tmp/Rtmp344lKk/Switzerland/data')
config.txt  log.txt  rDEM  rLandcover  rPopulation  vBorders  vFacilities  vNaturalPolygons  vRoads  vWaterLines  zToAccessMod
ptimoner commented 9 months ago

@mponce0 You are right, I committed the changes but I forgot to push them, my bad. Could you try again ?

Sorry for that, and thank you very much !

mponce0 commented 9 months ago

Tests are passing both in Linux and MacOS! Thank you for looking into this, will close this issue.

I've found another issue though, I will open a separate issue for it.