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unipept / unipept-desktop

This is the desktop application that accompanies the Unipept project.
https://unipept.ugent.be
MIT License
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Add support for new strain rank #136

Closed pverscha closed 3 years ago

pverscha commented 3 years ago

This PR adds support for the new NCBI strain rank to the Unipept Desktop application. The version number of the app is also bumped to v1.2.0.

pdawyndt commented 3 years ago

Can we analyse how many tryptic peptide LCA's now map to the strain rank. I would presume that many bacterial peptides would now snap to strain instead, where they used to map to species. Especially the (many?) peptides that only occur in a single protein. I guess this will be weird for many bacteriologists.

pverscha commented 3 years ago

@pdawyndt I can try to analyse this. A new version of the database is currently being loaded on our test server, after which I will be able to perform the required queries in order to determine this.