Inhibitors and activators are extracted from UniProt "Enzyme regulation" comments using regular expressions. Sometimes this leads to strange compound names (grep 'Not found in ChEBI' mega-mapper.log) like
[WARN]-[2013-05-13 16:38:43,859]-UniprotSaxParser-main- Not found in ChEBI: through dephosphorylation by protein phosphatase type 1
We have to improve the regular expressions in order to have less of these.
On the other hand, some of the extracted compound names seem sensible but are not found in ChEBI, ex:
[WARN]-[2013-05-13 16:38:56,314]-UniprotSaxParser-main- Not found in ChEBI: p-(chloromercuri)benzenesulfonic acid
Inhibitors and activators are extracted from UniProt "Enzyme regulation" comments using regular expressions. Sometimes this leads to strange compound names (grep 'Not found in ChEBI' mega-mapper.log) like
We have to improve the regular expressions in order to have less of these.
On the other hand, some of the extracted compound names seem sensible but are not found in ChEBI, ex:
These we should report to the ChEBI team.