Is your feature request related to a problem? Please describe.
When multiple adaptation stages are run it would be nice if all runs contribute to the check_adapted test for unique samples.
Describe the solution you'd like
All unique samples from all adaptation runs contribute
Describe alternatives you've considered
Clearer documentation on why this currently isn't the case and how to work around it.
Additional context
Original design had the stage_samples separate from the pmwgs object samples, don't think this still needs to be the case.
Is your feature request related to a problem? Please describe. When multiple adaptation stages are run it would be nice if all runs contribute to the
check_adaptedtest for unique samples.Describe the solution you'd like All unique samples from all adaptation runs contribute
Describe alternatives you've considered Clearer documentation on why this currently isn't the case and how to work around it.
Additional context Original design had the stage_samples separate from the pmwgs object samples, don't think this still needs to be the case.
Gavin