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univieCUBE / deepnog

Protein orthologous group assignment with deep learning
BSD 3-Clause "New" or "Revised" License
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Remove 'deepencoding' architecture #32

Closed VarIr closed 3 years ago

VarIr commented 3 years ago

Initially, the working title of the main deep network architecture used in deepnog was deepencoding. For the paper, we switched to calling this DeepNOG, similar to the program itself. This PR removes deepencoding altogether in order to avoid confusion about naming.

codecov[bot] commented 3 years ago

Codecov Report

Merging #32 (21cd493) into master (d62d350) will decrease coverage by 0.19%. The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #32      +/-   ##
==========================================
- Coverage   96.92%   96.72%   -0.20%     
==========================================
  Files          37       36       -1     
  Lines        2112     2045      -67     
==========================================
- Hits         2047     1978      -69     
- Misses         65       67       +2
Impacted Files Coverage Δ
deepnog/client/client.py 96.93% <ø> (-1.23%) :arrow_down:
deepnog/data/dataset.py 97.81% <ø> (ø)
deepnog/models/deepnog.py 96.92% <ø> (ø)
deepnog/tests/tests/test_utils.py 100.00% <ø> (ø)
deepnog/utils/io_utils.py 100.00% <ø> (ø)
deepnog/utils/network.py 91.22% <ø> (-3.51%) :arrow_down:
deepnog/utils/tests/test_imports.py 100.00% <ø> (ø)
deepnog/client/tests/test_cli.py 99.37% <100.00%> (ø)
deepnog/learning/tests/test_inference.py 100.00% <100.00%> (ø)
deepnog/models/__init__.py 100.00% <100.00%> (ø)
... and 5 more

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