Error BayesianOptimization

[jpeezy420]

Hi, Thank you for contributing this great pipeline. I am however getting an error at the BayesianOptimization module that says: Evaluation_ManualQuality is not measure for CytoplasmAdhesions. Any clues on how to fix this would be great. Thanks again.

[mariecutiongco]

Hello @jpeezy420, thanks for checking out our plugin! Could I check if you are using one of our example pipelines, which one is that? Manual, Automatic or SemiAuto?

[jpeezy420]

Hi @mariecutiongco , I have been trying to use manual pipeline; however, the BayesianOptimization module gives the error: Evalu;ation_ManualQuality is not measure for CytoplasmAdhesions. I have tried the automatic and the semiauto and a similar error displays. Thanks. John

[mariecutiongco]

@jpeezy420 I just downloaded and tested the Manual and Automated pipelines and have no problems running it on my machine. See the images attached.

Can I check that you have the following:

• CellProfiler v3
• our BayesianOptimisation plugins (the 3 .py files) accessible to CellProfiler. Please remember to put these .py files into the default CellProfile plugins folder, or point CellProfiler to a directory where these plugins are found. For details, see this documentation: http://cellprofiler-manual.s3.amazonaws.com/CellProfiler-3.0.0/help/other_plugins.html

Let me know if this helps!

[jpeezy420]

Hi @mariecutiongco , Here is a screen shot of the error I am getting in the automated pipeline. Thanks.

[mariecutiongco]

Hi @jpeezy420 , thanks for the screenshot! I wonder if this error is specific to the AutomatedEvaluation module - does the manual pipeline work for you? I think we'll have to rope in @lisalaux to check this error out. Any chance that you can export the CellProfiler log and upload it here? That might help us to troubleshoot. Thanks!

[lisalaux]

Hi @jpeezy420 , the logfile would be great! I'll have a look on this