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uqrmaie1 / admixtools

https://uqrmaie1.github.io/admixtools
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qpAdm computation stucks when the num. of letf pops below 3 #70

Closed nihilistshaman closed 5 months ago

nihilistshaman commented 5 months ago

qpAdm computation never ends when the number of left pops is set to below 3. 


> ℹ Reading metadata...
> ℹ Computing block lengths for 1150639 SNPs...
> ℹ Computing 10 f4-statistics for block 713 out of 713...
> ℹ Number of SNPs after excluding those with missing data: 69365
> ℹ Computing admixture weights...
> ℹ Computing standard errors...
> ℹ Computing number of admixture waves..

Terminal stucks here.

When I set the number of left pops 3 or more, it finishes the computing in seconds.

Any idea why?