urmi-21 pyrpipe issues - Githubissues

urmi-21 / pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

MIT License

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issues

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'matplotlib' has no attribute 'get_data_path'`

#20 Celine-Serry opened 9 months ago
1
basictest.py: sam_to_bam() got an unexpected keyword argument 'threads'

#19 wolfylair closed 2 years ago
2
OSError 'Directory not empty' while running 'pyrpipe_diagnostic test'

#18 wolfylair closed 2 years ago
2
Salmon quantification with several srr_object

#17 victorsanchezarevalo closed 2 years ago
10
Could you help me to install pyrpipe?

#16 daschukds closed 2 years ago
6
PackagesNotFoundError: The following packages are not available from current channels: - sra-tools=2.10.9

#15 aguycalledankit closed 2 years ago
4
OSError: cannot load library 'pango-1.0-0'

#14 JulieYue2021 closed 2 years ago
6
"ResolvePackageNotFound:" Trouble installing pyrpipe from environment.yaml into a virtual environment using conda

#13 aaronatp closed 3 years ago
3
ERROR - STAR command not found

#12 Sanat-Mishra closed 3 years ago
2
Create CODE_OF_CONDUCT.md

#11 urmi-21 closed 3 years ago
0
Update README.md

#10 eve-syrkin-wurtele closed 3 years ago
0
Update index.rst

#9 eve-syrkin-wurtele closed 3 years ago
0
Update README.md

#8 eve-syrkin-wurtele closed 3 years ago
0
log failed commands

#7 urmi-21 closed 3 years ago
1
Display command start and end times

#6 urmi-21 closed 3 years ago
0
Color error messages generated from pyrpipe

#5 urmi-21 closed 3 years ago
1
can "examples" be changed to "case studies" or called "examples (case studies)"

#4 evewurtele closed 4 years ago
1
cannot change the output dir for stringtie merge

#3 lijing28101 closed 4 years ago
1
format

#2 lijing28101 closed 4 years ago
0
Freeze after fasterq-dump

#1 lijing28101 closed 4 years ago
3