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urol-e5 / deep-dive

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Develop count matrix for transposable elements (expression) #3

Open sr320 opened 1 year ago

AHuffmyer commented 1 year ago

Need correct genome annotation to proceed

hputnam commented 1 year ago

@kubu4 We have chosen the P. meandrina genome.

jarcasariego commented 7 months ago

I was trying to run repeatmasker in all genomes to start moving the TE work, but I cannot find it. @kubu4 is the software available somewhere in the server? Did you have a chance of running this already?

kubu4 commented 7 months ago

See this issue for links to files:

https://github.com/urol-e5/deep-dive/issues/4

Here's my notebook with more info:

https://robertslab.github.io/sams-notebook/posts/2023/2023-05-26-Repeats-Identification---P.meandrina-Using-RepeatMasker-on-Mox/index.html