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Generate fasta file that includes short stack matches to database #46

Open sr320 opened 6 months ago

kubu4 commented 6 months ago

Sorry, how does this differ than the existing ShortStack output FastA?

sr320 commented 6 months ago

Sorry - lets get a fasta of just those miRNAs in the database that matched our deep dive samples

kubu4 commented 6 months ago

Apul:

https://github.com/urol-e5/deep-dive/blob/main/D-Apul/output/13.2.1.1-Apul-sRNAseq-ShortStack-FastA-extraction/mature-miRBase-matches.fasta

Peve

https://github.com/urol-e5/deep-dive/blob/main/E-Peve/output/08.2.1-Peve-sRNAseq-ShortStack-FastA-extraction/mature-miRBase-matches.fasta

Pmea

https://github.com/urol-e5/deep-dive/blob/main/F-Pmea/output/13.2.1.1-Pmea-sRNAseq-ShortStack-FastA-extraction/mature-miRBase-matches.fasta

sr320 commented 6 months ago

Sorry - lets get a fasta of just those miRNAs in the database

I think these are our seqs... I was wanting a fasta of those in the database...