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uros-sipetic / CWL-implementation-of-a-sciClone-based-Tumor-Heterogeneity-analysis

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no longer supports pre CWL v1.0 documents #1

Open Just08 opened 3 years ago

Just08 commented 3 years ago

Hi, i try to understand how to run your workflow. I launch this command on a cluster with cwlref-runner and cwltool installed:

cwl-runner tumor_heterogeneity_sciclone_based_workflow.cwl

The error sayS that the cwl used format is no longer supported :

Tool definition failed validation:
The CWL reference runner no longer supports pre CWL v1.0 documents. Supported versions are: 
v1.0
v1.1
v1.1.0-dev1 (with --enable-dev flag only)
v1.2
v1.2.0-dev1 (with --enable-dev flag only)
v1.2.0-dev2 (with --enable-dev flag only)
v1.2.0-dev3 (with --enable-dev flag only)
v1.2.0-dev4 (with --enable-dev flag only)
v1.2.0-dev5 (with --enable-dev flag only)

A detail explanation to run the workflow with the current cwl file or an update is possible ?

Thanks in advance.

uros-sipetic commented 3 years ago

Hey this was built in CWL:draft2, so the two options to run would be:

  1. With the Rabix Executor, which can most easily be run as bundled with the Rabix Composer
  2. By creating an account on the CGC platform, and running the workflow directly there