usadellab / Trimmomatic

Other
208 stars 70 forks source link

encouding error on WSL #19

Closed XiudingCai closed 2 years ago

XiudingCai commented 2 years ago

I am using WSL, meeting some error like this:

(base) ez@NYM:~/Trimmomatic$ ./Trimmomatic-0.39/trimmomatic-0.39.jar ./Trimmomatic-0.39/trimmomatic-0.39.jar: line 1: $'PK\003\004': command not found ./Trimmomatic-0.39/trimmomatic-0.39.jar: line 2: $'\bN[\210N': command not found ./Trimmomatic-0.39/trimmomatic-0.39.jar: line 3M[�Ng�6��META-INF/MANIFEST.MFM��: No such file or directory ./Trimmomatic-0.39/trimmomatic-0.39.jar: line 16: syntax error near unexpected token `)' ./Trimmomatic-0.39/trimmomatic-0.39.jar: line 16:'BY<��Y�AUTHORS.jbzip2�M,)�H-W��Sp+J�K�,�PK'

TonyBolger commented 2 years ago

Trimmomatic is a Java-based tool - it is run using 'java -jar Trimmomatic-0.39/trimmomatic-0.39.jar' or similar