Dear developers, Could you clarify please Is this program suitable for MGI data (2*150)? As far as I understand, the ILLUMINACLIP parameter does not make sense.
java -jar trimmomatic-0.36.jar PE 1.fq.gz 2.fq.gz pairedPE_1.fq.gz singlePE_1.fq pairedPE_2.fq.gz singlePE_2.fq SLIDINGWINDOW:4:20 LEADING:3 TRAILING:3 HEADCROP:10 MINLEN:50 -threads 8
HEADCROP:10 this option is here to remove adapters.
Dear developers, Could you clarify please Is this program suitable for MGI data (2*150)? As far as I understand, the ILLUMINACLIP parameter does not make sense.
java -jar trimmomatic-0.36.jar PE 1.fq.gz 2.fq.gz pairedPE_1.fq.gz singlePE_1.fq pairedPE_2.fq.gz singlePE_2.fq SLIDINGWINDOW:4:20 LEADING:3 TRAILING:3 HEADCROP:10 MINLEN:50 -threads 8HEADCROP:10 this option is here to remove adapters.