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usadellab / Trimmomatic

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Run time error exception occur #40

Open GUNAJIV opened 1 year ago

GUNAJIV commented 1 year ago

ava -jar /usr/share/java/trimmomatic-0.39.jar SE /home/centyle/Documents/metagenome/20607400637-Water-Sample-Molsys-Pvt-Ltd-NCGM-958_S26_L001_R1_001.fastq.gz /home/centyle/Documents/metagenome/20607400637-Water-Sample-Molsys-Pvt-Ltd-NCGM-958_S26_L001_R1_001.fastq_output.gz ILLUMINACLIP:/usr/share/trimmomatic/TruSeq3-SE.fa ILUMINACLIP:LEADING:3 TRAILING:1 SLIDINGWINDOW:1:5 MINLEN:10 TrimmomaticSE: Started with arguments: /home/centyle/Documents/metagenome/20607400637-Water-Sample-Molsys-Pvt-Ltd-NCGM-958_S26_L001_R1_001.fastq.gz /home/centyle/Documents/metagenome/20607400637-Water-Sample-Molsys-Pvt-Ltd-NCGM-958_S26_L001_R1_001.fastq_output.gz ILLUMINACLIP:/usr/share/trimmomatic/TruSeq3-SE.fa ILUMINACLIP:LEADING:3 TRAILING:1 SLIDINGWINDOW:1:5 MINLEN:10 Automatically using 1 threads Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Index 1 out of bounds for length 1 at org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer.makeIlluminaClippingTrimmer(IlluminaClippingTrimmer.java:67) at org.usadellab.trimmomatic.trim.TrimmerFactory.makeTrimmer(TrimmerFactory.java:32) at org.usadellab.trimmomatic.Trimmomatic.createTrimmers(Trimmomatic.java:59) at org.usadellab.trimmomatic.TrimmomaticSE.run(TrimmomaticSE.java:318) at org.usadellab.trimmomatic.Trimmomatic.main(Trimmomatic.java:85)