usafsam / mad_river_wf

SARS-CoV-2 analysis workflow, using Nextflow and bbtools
Apache License 2.0
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Surface parameter for VADR container #18

Closed fanninpm closed 2 years ago

fanninpm commented 2 years ago

This allows someone to change the container used to run VADR at their discretion, simply by passing a command-line argument or by specifying it in a config file.

friesac commented 2 years ago

Ah, so we can just --container_vadr staphb/vadr:1.4.1-models-1.3-2 if we wanted to run prior versions.