uschwartz / nucMACC

Pipeline to call hyper and hypo accessible nucleosomes and nucleosomes with non-canonical structure based on differential MNase-seq data
MIT License
3 stars 1 forks source link

Add fragment_statistics to pipeline #2

Closed hausmann-c closed 2 years ago

hausmann-c commented 2 years ago

Feature branch contains all files and changes needed to perform statistics for fragment visualization in the form of txt-files and plots. Produces two plots, one depicting the fragments lost during pipeline performance, the other the absolute amount of reads at multiple points during the pipeline. Txt files contain the base data depicted in the plots.