Install request for single cell lab tools

[neoformit]

I concatenated all the single cell sections into our one "Single-Cell" section. This way I think we should be able to have them all installed to the base site as normal, but then split them into custom sections with a panel_view for the SC lab.

[cat-bro]

Don't worry about "Error: scanpy_plot revision 9a169729c9f9 is not installable" - that should be a warning because Galaxy will either install the next installable revision or skip because that revision is already installed.

Something like this: "Warning: Tool scanpy_run_umap revision ea91cfd0444e is already installed on https://staging.gvl.org.au/ in a different section 'HCA Single-cell'" needs to be fixed (should be an error)

[cat-bro]

I'll push some linter commits onto this

[neoformit]

Ok I'll filter out the ones that are already installed

[neoformit]

I made a little python script to remove tools that are already installed in a different section. Could that go in scripts/ here?

[cat-bro]

that would be great

[neoformit]

Done @cat-bro

[cat-bro]

Thanks @neoformit . Not quite ready to merge this, thinking about adding container arrangements in tpv prior to merging.

[neoformit]

Let me know if I can do anything else

[cat-bro]

Thanks @neoformit. Could you please cut off everything below line 111 and paste it into another request? The installation process has been unpredictable so I'd like to see how it copes with the new release before giving it a bigger request.

[neoformit]

Sure, into a different file or different branch/PR?

[cat-bro]

different PR

[neoformit]

Done