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Update tool recommendation api w transformers #141

Closed anuprulez closed 1 year ago

anuprulez commented 1 year ago

The PR is from Galaxy main: https://github.com/galaxyproject/galaxy/pull/14791 which updates tool recommendation API according to a new deep learning model based on transformers.

Bioxiv preprint: https://www.biorxiv.org/content/10.1101/2022.12.16.520746v1

ping @bgruening Thank you!

github-actions[bot] commented 1 year ago

This PR was merged without a "kind/" label, please correct.

anuprulez commented 1 year ago

Thanks @mira-miracoli

anuprulez commented 1 year ago

I tried to run this feature on the EU server but am getting 500 error in the API get_tool_predictions

tool-prediction-error-07-02

I started a local Galaxy instance using release_22.05_europe branch, and the feature works well. I think on the EU, the correct version of TensorFlow is not installed. Can we check the log to find the exact error?

local-eu-release

ping @mira-miracoli thanks a lot!

mira-miracoli commented 1 year ago

I checked the venv and tensorflow is on version 2.9.3 on sn06 and on celery

bgruening commented 1 year ago

@anuprulez can you get me an API request I can try to get you an error log?