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usegalaxy-eu / galaxy

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https://galaxyproject.org/
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Allow to use more recent kernel on interactive_tool_jupyter_notebook #244

Open yvanlebras opened 1 month ago

yvanlebras commented 1 month ago

Describe the bug Not really a bug BUT using interactive_tool_jupyter_notebook tool, we see that R kernel (and others I guess) are using old version:

You are using R version:         4.0.3 (2020-10-10)
And the latest R version is:     4.4.1 (2024-06-15)

It is thus difficult or impossible to install recent packages

Galaxy Version and/or server at which you observed the bug usegalaxy.eu

Expected behavior it seems to me important to update regularly this tool and thus related docker image so 1/ we can use recent packages/libraries 2/ we allow, using previous versions of the tool, to still use jupitool on worklows using nobooks as input datasets

Additional context need to take care to keep possibilities to use old versions for jupytool use in workflows

yvanlebras commented 1 month ago

Timothée TIMOTHEE

(first try of computer writing of my little one ;) )

bgruening commented 1 month ago

The Docker image would need an update: https://github.com/bgruening/docker-jupyter-notebook

I guess bumping all requirements or just triggering a new build should do the trick.