usegalaxy-eu / infrastructure-playbook

Ansible playbook for managing UseGalaxy.eu infrastructure.
MIT License
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Datatypes warning #251

Open gmauro opened 3 years ago

gmauro commented 3 years ago

They're a bunch of warnings for Datatype class not found for extension

root@sn06:~$ journalctl -u galaxy-zergling@0 --since "24 hours ago" --no-pager  | grep -i "Datatype class not found" | cut -f4 -d']' |sort| uniq -c
      2  Datatype class not found for extension '1sc', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension '2fl', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'ace', which is used in the 'format' attribute of parameter 'infile'
      2  Datatype class not found for extension 'acff', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'afi', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'afm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'aiix', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'aim', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'aisf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'al3d', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ali', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'amiramesh', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'am', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'analysisxml', which is used in the 'format' attribute of parameter 'param_in'
      2  Datatype class not found for extension 'ano', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'apl', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'arf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'atsf', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'bcf_bgz', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'bed.interval', which is used in the 'format' attribute of parameter 'infile'
      2  Datatype class not found for extension 'bin', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'biom', which is used in the 'format' attribute of parameter 'input_path'
      1  Datatype class not found for extension 'biom', which is used in the 'format' attribute of parameter 'otu_map_fp'
      2  Datatype class not found for extension 'biom', which is used in the 'format' attribute of parameter 'otu_table_fp'
      2  Datatype class not found for extension 'bip', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'c01', which is used in the 'format' attribute of parameter 'input_file'
      6  Datatype class not found for extension 'cachedmzml', which is used in the 'format' attribute of parameter 'param_in'
      2  Datatype class not found for extension 'cfg', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ch5', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'cif', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'cmcompare', which is used in the 'format' attribute of parameter 'cmcompare_file'
      2  Datatype class not found for extension 'companion.ome', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'cr2', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'crw', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'cxd', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'czi', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'danalyze75', which is used in the 'format' attribute of parameter 'infile'
      2  Datatype class not found for extension 'dat', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'dat', which is used in the 'format' attribute of parameter 'param_search_file'
      2  Datatype class not found for extension 'dcm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'df3', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'diamond_database', which is used in the 'format' attribute of parameter 'reference_database'
      2  Datatype class not found for extension 'dib', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'dicom', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'dict', which is used in the 'format' attribute of parameter 'f'
      2  Datatype class not found for extension 'dic', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'dm2', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'dm3', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'dm4', which is used in the 'format' attribute of parameter 'input_file'
     14  Datatype class not found for extension 'dot'
      2  Datatype class not found for extension 'dti', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'dv.log', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'dv', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'env', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'epsi', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ets', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'exp', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'fake', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'fasta.bz2', which is used in the 'format' attribute of parameter 'forward_input'
      3  Datatype class not found for extension 'fasta.bz2', which is used in the 'format' attribute of parameter 'input_pair'
      3  Datatype class not found for extension 'fasta.bz2', which is used in the 'format' attribute of parameter 'input_sequences'
      3  Datatype class not found for extension 'fasta.bz2', which is used in the 'format' attribute of parameter 'reverse_input'
      1  Datatype class not found for extension 'fastqgsanger.gz', which is used in the 'format' attribute of parameter 'fastq_r2_in'
      3  Datatype class not found for extension 'fa', which is used in the 'format' attribute of parameter 'center_fa_file'
      3  Datatype class not found for extension 'fa', which is used in the 'format' attribute of parameter 'transcript'
      2  Datatype class not found for extension 'fdf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'fff', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ffr', which is used in the 'format' attribute of parameter 'input_file'
     11  Datatype class not found for extension 'fid', which is used in the 'format' attribute of parameter 'param_in'
      2  Datatype class not found for extension 'fits', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'flex', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'frm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'fts', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'gd_covered_cds', which is used in the 'format' attribute of parameter 'intervals'
      1  Datatype class not found for extension 'gd_genotype', which is used in the 'format' attribute of parameter 'coverage_input'
      2  Datatype class not found for extension 'gd_genotype', which is used in the 'format' attribute of parameter 'cov_input'
      1  Datatype class not found for extension 'gd_genotype', which is used in the 'format' attribute of parameter 'dst'
     15  Datatype class not found for extension 'gd_genotype', which is used in the 'format' attribute of parameter 'input'
      1  Datatype class not found for extension 'gd_genotype', which is used in the 'format' attribute of parameter 'snp_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'ap1_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'ap2_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'ap3_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'founders'
      2  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'indiv_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'indivs'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'indivs_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'p0_input'
      9  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'p1_input'
      3  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'p2_input'
      3  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'p_input'
      1  Datatype class not found for extension 'gd_indivs', which is used in the 'format' attribute of parameter 'pop_input'
      3  Datatype class not found for extension 'gd_ped', which is used in the 'format' attribute of parameter 'input'
      1  Datatype class not found for extension 'gd_sap', which is used in the 'format' attribute of parameter 'saps'
      1  Datatype class not found for extension 'gd_snp', which is used in the 'format' attribute of parameter 'coverage_input'
      2  Datatype class not found for extension 'gd_snp', which is used in the 'format' attribute of parameter 'cov_input'
      1  Datatype class not found for extension 'gd_snp', which is used in the 'format' attribute of parameter 'dst'
     16  Datatype class not found for extension 'gd_snp', which is used in the 'format' attribute of parameter 'input'
      1  Datatype class not found for extension 'gd_snp', which is used in the 'format' attribute of parameter 'snp_input'
      1  Datatype class not found for extension 'gd_snp', which is used in the 'format' attribute of parameter 'snps'
      2  Datatype class not found for extension 'gel', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'gerald', which is used in the 'format' attribute of parameter 'input'
      1  Datatype class not found for extension 'gfa2', which is used in the 'format' attribute of parameter 'gfa_file'
      2  Datatype class not found for extension 'grey', which is used in the 'format' attribute of parameter 'input_file'
      6  Datatype class not found for extension 'gtiff', which is used in the 'format' attribute of parameter 'input'
      2  Datatype class not found for extension 'gtiff', which is used in the 'format' attribute of parameter 'input1'
      3  Datatype class not found for extension 'gz', which is used in the 'format' attribute of parameter 'I1'
      2  Datatype class not found for extension 'gz', which is used in the 'format' attribute of parameter 'I2'
      9  Datatype class not found for extension 'gz', which is used in the 'format' attribute of parameter 'input_1'
      3  Datatype class not found for extension 'gz', which is used in the 'format' attribute of parameter 'input_2'
     28  Datatype class not found for extension 'h5loom', which is used in the 'format' attribute of parameter 'loom_file'
      2  Datatype class not found for extension 'hdf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'hdr', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'hed', which is used in the 'format' attribute of parameter 'input_file'
      6  Datatype class not found for extension 'hic', which is used in the 'format' attribute of parameter 'matrixHic'
      2  Datatype class not found for extension 'his', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'htd', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'htm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'hx', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'i2i', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ics', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ids', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'igmt', which is used in the 'format' attribute of parameter 'infile'
      2  Datatype class not found for extension 'im3', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ima', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'img', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ims', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'ind', which is used in the 'format' attribute of parameter 'group1'
      1  Datatype class not found for extension 'ind', which is used in the 'format' attribute of parameter 'group2'
      2  Datatype class not found for extension 'inf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'inr', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ipl', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ipm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ipw', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'j2ki', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'j2kr', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'j2k', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'jp2', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'jpeg', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'jpe', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'jpf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'jpk', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'jpx', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'l2d', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'labels', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'lei', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'liff', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'lif', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'lim', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'lms', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'log', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'lsm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'lut', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'map', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mdb', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mea', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mnc', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mng', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mod', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mrcs', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mrc', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mrw', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'msr', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mtb', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'mvd2', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'naf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'nd2', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ndpis', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'nd', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'nef', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'nii.gz', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'nii', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'nwk', which is used in the 'format' attribute of parameter 'fileNewick'
      2  Datatype class not found for extension 'nw', which is used in the 'format' attribute of parameter 'fileNewick'
      2  Datatype class not found for extension 'obf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'oib', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'oif', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'oir', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome.btf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome.tf2', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome.tf8', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome.tiff', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome.tif', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ome.xml', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'omssaxml', which is used in the 'format' attribute of parameter 'param_in'
      1  Datatype class not found for extension 'ovl', which is used in the 'format' attribute of parameter 'ovl_input'
      3  Datatype class not found for extension 'params', which is used in the 'format' attribute of parameter 'param_params_file'
      2  Datatype class not found for extension 'par', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pcoraw', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pct', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'phd', which is used in the 'format' attribute of parameter 'infile'
      2  Datatype class not found for extension 'phy', which is used in the 'format' attribute of parameter 'input'
      2  Datatype class not found for extension 'pict', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pic', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pnl', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pr3', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pst', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'ps', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'pty', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'r3d_d3d', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'r3d.log', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'r3d', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'rec', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'res', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'rsem_sam', which is used in the 'format' attribute of parameter 'rsem_sam'
      2  Datatype class not found for extension 'sdt', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'seq', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'set', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'sld', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'sm2', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'sm3', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'snp', which is used in the 'format' attribute of parameter 'input'
      2  Datatype class not found for extension 'spc', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'spe', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'spi', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'spl', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'stk', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'stp', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'st', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'sxm', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'tablular', which is used in the 'format' attribute of parameter 'chrom_sizes'
      1  Datatype class not found for extension 'tabula', which is used in the 'format' attribute of parameter 'cell_controls'
      3  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'cmfinder_fa'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'dbn_input_file'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'filterList'
      8  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'id_file'
      1  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'infile'
      4  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'input'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'input_data'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'list1'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'list2'
      1  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'param_inspect_input'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'plasmid_meta'
      7  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'query'
      1  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'scoringMatrixFileName'
      1  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'snp_profiles'
      1  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'struct_profiles'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'tree_file'
      2  Datatype class not found for extension 'text', which is used in the 'format' attribute of parameter 'tree_matrix'
      2  Datatype class not found for extension 'tfr', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'tga', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'thm', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'tim', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'tnb', which is used in the 'format' attribute of parameter 'input_file'
      1  Datatype class not found for extension 'uniprot-xml', which is used in the 'format' attribute of parameter 'infile'
      1  Datatype class not found for extension 'vcf_bgz', which is used in the 'format' attribute of parameter 'input_file'
      6  Datatype class not found for extension 'vrt', which is used in the 'format' attribute of parameter 'input'
      2  Datatype class not found for extension 'vrt', which is used in the 'format' attribute of parameter 'input1'
      2  Datatype class not found for extension 'vsi', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'v', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'vws', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'wat', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'wav', which is used in the 'format' attribute of parameter 'input_file'
      9  Datatype class not found for extension '', which is used in the 'format' attribute of parameter 'align_peaks_msidata'
      2  Datatype class not found for extension '', which is used in the 'format' attribute of parameter 'cent_index'
      1  Datatype class not found for extension '', which is used in the 'format' attribute of parameter 'param_cv_files'
      9  Datatype class not found for extension '', which is used in the 'format' attribute of parameter 'peaks_msidata'
      1  Datatype class not found for extension '', which is used in the 'format' attribute of parameter 'population_callset'
     22  Datatype class not found for extension 'wigBed'
      2  Datatype class not found for extension 'wlz', which is used in the 'format' attribute of parameter 'input_file'
      3  Datatype class not found for extension 'xcf', which is used in the 'format' attribute of parameter 'input'
      2  Datatype class not found for extension 'xdce', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'xlog', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'xqd', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'xqf', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'xv', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'xys', which is used in the 'format' attribute of parameter 'input_file'
     14  Datatype class not found for extension 'yml', which is used in the 'format' attribute of parameter 'exclusions'
      2  Datatype class not found for extension 'zfp', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'zfr', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'zpo', which is used in the 'format' attribute of parameter 'input_file'
      2  Datatype class not found for extension 'zvi', which is used in the 'format' attribute of parameter 'input_file'
gmauro commented 3 years ago

ping @bgruening