The following comments come from a email, regarding feedback on the microGalaxy technical paper's figures.
For the tools figures:
Availability heatmap:
[x] She liked the colors, so can we keep them, she said its good to show how Muther and other tool suits have alot of tools inside and all of them are available in Galaxy servers and so on
[x] She said to keep all servers in one heatmap, so the idea of splitting and having two heatmaps she didnot like, but she said she would prefer if they are separated in the same figure, such that, all servers starting with "useGalaxy ..." are on the top, and others are bellow and there is a kind of separation between top and bottom, may be like a line break or so
[x] She also said that the tools.tsv table has some naming mistakes, so the X-axis should be renamed to "Galaxy Tool Suits" instead of wrappers, because normal tools should be called wrappers, not the one including multiple tools, that should be everywhere renamed as Galaxy Tool Suits
[x] She also said she wants to keep all tool suits that are present at least once in any of the servers that starts with "useGalaxy". So more tool suits will appear on the x-axis i guess since before the condition was "at least present in 2 servers"
EDAM scattered plots:
[x] She liked them and had no more to add to them, except as we agreed removing the correlation line and try to have another version of the plot but concatenated like Pauls example
For the tutorial figures:
Tools coverage barchart
[x] She asked to check if the number plotted are the number of tool suits not the number of tools, since she said 60 tool suits for the first tutorial is a high number, so she was just doubting, if we can check that would be great
[ ] She also wants another figure showing how each tool suit is supported by how many tutorial, so the other way around, so I thought of something like the heat map of tools table, and instead showing the Galaxy servers we show the tutorials
[ ] She said it would be nice if the bar chart was also catigorised based on EDAM topic or maybe ordering them based on their EDAM operation/topic
For the tools figures:
Availability heatmap:
EDAM scattered plots:
For the tutorial figures:
Tools coverage barchart
EDAM bubble chart: