Integrating a haplotype analysis visualization into Galaxy
Supervisor: Mehmet Tekman, Anup Kumar, Joachim Wolff
For degree: Project
Status: In progress (assigned to @veild)
Keywords: Haplotypes, HaploForge, Linkage, Javascript
Global Biological/Research context
The study of haplotypes is relevant to pedigree analysis, which looks for mutations inherited from founders that manifest only after many generations due to the semi-random/coalescent nature of inheritance. This project will be wrapping an existing haplotype visualization tool into Galaxy, an open source web-based bioinformatic analysis environment, in order to reach a greater number of users. Applicants must know basic Javascript and HTML/XML.
Project context
This would complement rare disease and pedigree analysis research.
Objectives of the project
Integrate the existing HaploForge javascript utility to be used within Galaxy.
Proposed agenda for the project
[ ] Update code to ES6 standard
[X] Locate entry points for Galaxy
[ ] (optional) Add utility tests using a modern testing framework for Javascript
mtekman
commented
4 years ago
Integrating a haplotype analysis visualization into Galaxy
Supervisor: Mehmet Tekman, Anup Kumar, Joachim Wolff For degree: Project Status: In progress (assigned to @veild) Keywords: Haplotypes, HaploForge, Linkage, Javascript
Global Biological/Research context
The study of haplotypes is relevant to pedigree analysis, which looks for mutations inherited from founders that manifest only after many generations due to the semi-random/coalescent nature of inheritance. This project will be wrapping an existing haplotype visualization tool into Galaxy, an open source web-based bioinformatic analysis environment, in order to reach a greater number of users. Applicants must know basic Javascript and HTML/XML.
Project context
This would complement rare disease and pedigree analysis research.
Objectives of the project
Integrate the existing HaploForge javascript utility to be used within Galaxy.
Proposed agenda for the project
Prerequisites