Supervisor: Bérénice Batut (@bebatut)
For degree: Bachelor/Project/Master
Status: Open
Keywords: Galaxy, R, RNA-seq
Global Biological/Research context
DESeq2 is a widely used tool to analyze RNA-Seq data.
Project context
DESeq2 provides a lot of functionalities and supports complex RNA-Seq data analysis. DESeq2 is available in Galaxy, but the integration does not support all functionalities of DESeq2 (complex models, functions, etc).
Objectives of the project
The objective of the project would be to expand the Galaxy integration of DESeq2, develop a user-friendly interface to interact with the DESeq2 objects and outputs.
Proposed agenda for the project
Test DESeq2 (in R and in Galaxy) on several datasets
Identify the missing pieces in the Galaxy integration
Expand DESeq2 integration into Galaxy
Supervisor: Bérénice Batut (@bebatut) For degree: Bachelor/Project/Master Status: Open Keywords: Galaxy, R, RNA-seq
Global Biological/Research context
DESeq2 is a widely used tool to analyze RNA-Seq data.
Project context
DESeq2 provides a lot of functionalities and supports complex RNA-Seq data analysis. DESeq2 is available in Galaxy, but the integration does not support all functionalities of DESeq2 (complex models, functions, etc).
Objectives of the project
The objective of the project would be to expand the Galaxy integration of DESeq2, develop a user-friendly interface to interact with the DESeq2 objects and outputs.
Proposed agenda for the project
Prerequisites
Further reading and useful links