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usegalaxy-no / galaxyadmin

A repository for managing the work of the usegalaxy.no GalaxyAdmin team
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Change EDGEpro2DEseq python script (python2 to 3 issue) #16

Closed ehj000 closed 3 years ago

ehj000 commented 3 years ago

Could someone with ssh access (I don't have it yet) please change two lines in this python script: /srv/galaxy/var/shed_tools/galaxy-ntnu.bioinfo.no/toolshed_nels/repos/kjetil/edgepro2deseq/ce665b3f5811/edgepro2deseq/edgepro/edge2deseq.py

Line 29 from: print '\t'.join(['gene'] + filenames) to: print ('\t'.join(['gene'] + filenames)) And line 31 from: print '\t'.join([name] + results[name]) to: print ('\t'.join([name] + results[name]))

kjetilkl commented 3 years ago

I have updated the edgepro2deseq tool wrapper in the NeLS toolshed so the tool can be reinstalled

ehj000 commented 3 years ago

I have reinstalled and tested it. I works - thanks for your help. I will uninstall the old version form the main toolshed as both versions appear in the tool menu