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usegalaxy-no / galaxyadmin

A repository for managing the work of the usegalaxy.no GalaxyAdmin team
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running in parallel for repeatmasker #70

Closed tothuhien closed 1 year ago

tothuhien commented 1 year ago

The tool RepeatMasker has a parallel option which is set as: -parallel \${GALAXY_SLOTS:-1}

but it always run with 1 cpu. Is it something to do with the tool_destinations.yaml file? Thanks.

kjetilkl commented 1 year ago

Indeed! The tool had been mislabelled as "repeat_masker" in tool_destinations.yaml, but I have changed it to the correct tool ID "repeatmasker_wrapper". So, RepeatMasker should now be running with 16 cores!

tothuhien commented 1 year ago

Great, thanks Kjetil!

kjetilkl commented 1 year ago

I did not see your pull request @tothuhien before now, so I hadn't noticed that you had solved the problem already long before me! :-)

tothuhien commented 1 year ago

haha, as long as it was fixed :-)