search

usegalaxy-no / galaxyadmin

A repository for managing the work of the usegalaxy.no GalaxyAdmin team
0 stars 0 forks source link

error tool/ module not found #82

Closed tothuhien closed 1 year ago

tothuhien commented 1 year ago

It seems that from late last friday, all jobs failed with different errors but in general is: tool/module etc ... not found. While those tools used to work before. I have rerun some previously successful jobs and now they all failed. Is there update on the system lately?

tothuhien commented 1 year ago

As Kjetil pointed out that it failed to call the specific container of each tool, so always the default container was used - which obviously do not contain any package requirement for the tool. The log file pointed out error was caused by the function list_cached_mulled_images_from_path of the file /srv/galaxy/server/lib/galaxy/tool_util/deps/container_resolvers/mulled.py. This function is supposed to list all the available containers in the folder /srv/galaxy/containers/singularity/mulled - in order to find the container name for the tool. It failed because there're some manually created containers with the name do not respect the name rule that they should be. For example: mulled-v2-2dfb284e80d1e71bb82a6298b977e01b29ba3dc0.sif_kjetil. I have now moved those containers to another place /srv/galaxy/containers/singularity/test and it seems to fix the problem.

kjetilkl commented 1 year ago

Well, I guess we know who to blame now :-P

sveinugu commented 1 year ago

Well, I guess we know who to blame now :-P

Stuff happens. I've done far worse! Try to stay away for the rest of your vacation now...!