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usnistgov / MIST

Microscopy Image Stitching Tool
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Issue with installation: no module named numpy #37

Closed cdtcoustet closed 1 year ago

cdtcoustet commented 1 year ago

Hello, I've been trying to install MIST for a couple of hours but "ImportError: no module named numpy" keep returning to me. I use the version 1.54d of Fiji on MacOS and installed both fftw and Cuda (but none of them is working). I read that similar issues are usually associated with the newer versions of Jython but I can't seem to find a solution to overcome this message. Does anyone have any idea how I could solve this issue? Thank you very much in advance for your help!

tblattner commented 1 year ago

Happy to help try to debug the issue.

I'm not aware of us using numpy or python within the Java MIST codebase. We do have a few utilities that are within this repository, so wanted to get some clarification on your use case here.

Can you provide the set of steps you do to reproduce the error. Are you able to see the MIST user interface?

cdtcoustet commented 1 year ago

Thank you so much for your help! Here are the screenshots of the content of MIST folder (which I placed in the "plugin" repository) and the issue returned when I try to launch the plugin with FIJI: Capture d’écran 2023-04-28 à 10 32 42 Capture d’écran 2023-04-28 à 10 33 58 And I am not able to open the MIST interface.

tblattner commented 1 year ago

Did you follow these instructions? https://github.com/USNISTGOV/MIST/wiki/Install-Guide

The manual installation instructions are out of date, and will need to be updated most likely. So using the update site is the recommended way to install MIST.

cdtcoustet commented 1 year ago

Oops, you were right, I skipped one step and now everything works well... Thanks for your time!