Log much more information about FiPy environment

guyer commented 9 months ago

Remove obsolete vitals module (svn, really???)

guyer commented 9 months ago

Based on discussion with @wd15 last night, I realized I hadn't made clear the point of this PR. When DEBUG logging is on, this PR results in output like (although not formatted for readability)

2024-01-10 08:36:09,640 - DEBUG - fipy - <module> - {
    'argv': ['-m'],
    'platform': {
        'architecture': ['64bit', ''],
        'machine': 'arm64',
        'node': 'DEADBEEF',
        'platform': 'macOS-13.6.2-arm64-arm-64bit',
        'processor': 'arm',
        'release': '22.6.0',
        'system': 'Darwin',
        'version': 'Darwin Kernel Version 22.6.0: Thu Nov  2 07:43:57 PDT 2023; root:xnu-8796.141.3.701.17~6/RELEASE_ARM64_T6000'
    },
    'package': {
        'python': '3.11.4 | packaged by conda-forge | (main, Jun 10 2023, 18:08:41) [Clang 15.0.7 ]',
        'fipy': '3.4.4+294.gdf9e2f4d7',
        'numpy': '1.24.3',
        'pysparse': 'not installed',
        'scipy': '1.10.1',
        'matplotlib': '3.7.1',
        'mpi4py': '3.1.4',
        'petsc4py': '3.18.4',
        'pyamgx': 'not installed',
        'PyTrilinos': 'not installed',
        'mayavi': '4.8.1',
        'gmsh': '4.11.1',
        'solver': 'petsc'
    },
    'conda': {
        'conda_info': {
            'GID': 36677,
            'UID': 17723,
            'active_prefix': '/Users/guyer/mambaforge-arm/envs/fipy311',
            'active_prefix_name': 'fipy311',
            'av_data_dir': '/Users/guyer/mambaforge-arm/etc/conda',
            'av_metadata_url_base': None,
            'channels': ['https://conda.anaconda.org/conda-forge/osx-arm64',
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                'https://repo.anaconda.com/pkgs/main/osx-arm64',
                'https://repo.anaconda.com/pkgs/main/noarch',
                'https://repo.anaconda.com/pkgs/r/osx-arm64',
                'https://repo.anaconda.com/pkgs/r/noarch'
            ],
            'conda_build_version': 'not installed',
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            'conda_location': '/Users/guyer/mambaforge-arm/lib/python3.10/site-packages/conda',
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                '/Users/guyer/.condarc'
            ],
            'default_prefix': '/Users/guyer/mambaforge-arm/envs/fipy311',
            'env_vars': {
                'CIO_TEST': '<not set>',
                'CONDA_DEFAULT_ENV': 'fipy311',
                'CONDA_EXE': '/Users/guyer/mambaforge-arm/bin/conda',
                'CONDA_PREFIX': '/Users/guyer/mambaforge-arm/envs/fipy311',
                'CONDA_PREFIX_1': '/Users/guyer/mambaforge-arm',
                'CONDA_PROMPT_MODIFIER': '(fipy311) ',
                'CONDA_PYTHONBREAKPOINT': '',
                'CONDA_PYTHON_EXE': '/Users/guyer/mambaforge-arm/bin/python',
                'CONDA_ROOT': '/Users/guyer/mambaforge-arm',
                'CONDA_SHLVL': '2',
                'CURL_CA_BUNDLE': '<not set>',
                'DYLD_LIBRARY_PATH': '/Users/guyer/anaconda/envs/fipy_petsc/lib/python2.7/site-packages/petsc/lib:/usr/local/lib/SMESH-5.1.2.2:/usr/local/lib/GEOM-5.1.2.7:/Library/OpenCASCADE/6.3.0/lib:',
                'LD_LIBRARY_PATH': '/Users/guyer/anaconda/envs/fipy_petsc/lib:',
                'LD_PRELOAD': '<not set>',
                'MANPATH': ':/usr/local/man',
                'PATH': '/Users/guyer/mambaforge-arm/envs/fipy311/bin:/Users/guyer/mambaforge-arm/condabin:/Users/guyer/anaconda/bin:/Applications/Postgres.app/Contents/Versions/9.3/bin:/Users/guyer/bin:/usr/local/share/python:/usr/local/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/guyer/.local/bin',
                'PYTHONBREAKPOINT': 'ipdb.set_trace',
                'REQUESTS_CA_BUNDLE': '<not set>',
                'SSL_CERT_FILE': '<not set>'
            },
            'envs': ['/Users/guyer/.condax/conda-lock',
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                '/Users/guyer/mambaforge-arm/envs/fipy27',
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                '/Users/guyer/mambaforge-arm/envs/radhe',
                '/Users/guyer/mambaforge-arm/envs/sphinx',
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                '/Users/guyer/mambaforge/envs/swc'
            ],
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                '/Users/guyer/.conda/envs'
            ],
            'netrc_file': None,
            'offline': False,
            'pkgs_dirs': ['/Users/guyer/mambaforge-arm/pkgs',
                '/Users/guyer/.conda/pkgs'
            ],
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            'rc_path': '/Users/guyer/.condarc',
            'requests_version': '2.31.0',
            'root_prefix': '/Users/guyer/mambaforge-arm',
            'root_writable': True,
            'site_dirs': [],
            'sys.executable': '/Users/guyer/mambaforge-arm/bin/python',
            'sys.prefix': '/Users/guyer/mambaforge-arm',
            'sys.version': '3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:12:31) [Clang 14.0.6 ]',
            'sys_rc_path': '/Users/guyer/mambaforge-arm/.condarc',
            'user_agent': 'conda/23.7.4 requests/2.31.0 CPython/3.10.10 Darwin/22.6.0 OSX/13.6.2 solver/libmamba conda-libmamba-solver/23.3.0 libmambapy/1.5.1',
            'user_rc_path': '/Users/guyer/.condarc',
            'virtual_pkgs': [
                ['__archspec', '1', 'arm64'],
                ['__osx', '13.6.2', '0'],
                ['__unix', '0', '0']
            ]
        },
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                'setuptools=67.7.2=pyhd8ed1ab_0',
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                'sphinxcontrib-htmlhelp=2.0.1=pyhd8ed1ab_0',
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                        'appdirs==1.4.4',
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                        'docutils==0.18.1',
                        'ensureconda==1.4.3',
                        'filelock==3.13.1',
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                        'pyspelling==2.9',
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                        'smmap==5.0.0',
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            ],
            'name': 'fipy311',
            'prefix': '/Users/guyer/mambaforge-arm/envs/fipy311'
        }
    }
}

guyer commented 9 months ago

The same mechanism is then leveraged to generate the simple table output by the tests, using the packages entry in the JSON:


python      3.11.4 | packaged by conda-forge | (main, Jun 10 2023, 18:08:41) [Clang 15.0.7 ]
fipy        3.4.4+294.gdf9e2f4d7
numpy       1.24.3
pysparse    not installed
scipy       1.10.1
matplotlib  3.7.1
mpi4py      3.1.4
petsc4py    3.18.4
pyamgx      not installed
PyTrilinos  not installed
mayavi      4.8.1
gmsh        4.11.1
solver      petsc

guyer commented 9 months ago

Should log environment variables

wd15 commented 9 months ago

How do I switch on the logging? For example if I run python examples/diffusion/mesh1d.py.

wd15 commented 9 months ago

I tried this

>>> import logging
>>> logging.basicConfig(level=logging.DEBUG)

at the beginning of the example, but nothing happened.

guyer commented 9 months ago

I tried this
>>> import logging
>>> logging.basicConfig(level=logging.DEBUG)
at the beginning of the example, but nothing happened.

The problem is that fipy has already been imported by the time you do that, so its loggers don't realize they should be doing DEBUG logging. Two options:

Move that to the very end, in the test harness, before the first fipy import:

@@ -856,5 +856,8 @@ from __future__ import unicode_literals
 __docformat__ = 'restructuredtext'

if __name__ == '__main__':
+    import logging
+    logging.basicConfig(level=logging.DEBUG)
+
     import fipy.tests.doctestPlus
     exec(fipy.tests.doctestPlus._getScript())

Add a logger environment variable:

FIPY_LOG_CONFIG=fipy/tools/logging/serial_config.json python examples/diffusion/mesh1D.py

guyer commented 9 months ago

2. Add a logger environment variable:

    FIPY_LOG_CONFIG=fipy/tools/logging/serial_config.json python examples/diffusion/mesh1D.py

note: that will only dump debug info into a file called fipy.log, but not to the console. You can get it to go to the console, too, by editing the config file:

--- a/fipy/tools/logging/serial_config.json
+++ b/fipy/tools/logging/serial_config.json
@@ -8,7 +8,8 @@
     "handlers": {
         "console": {
             "class": "logging.StreamHandler",
-            "level": "INFO"
+            "formatter": "default",
+            "level": "DEBUG"
         },
         "serialfile": {
             "class": "logging.FileHandler",

tkphd commented 9 months ago

I ran examples.phase.simple with FIPY_LOG_CONFIG=fipy/tools/logging/serial_config.json and get the following output. This looks right, yeah?

examples.phase.simple output, beautified

```json { "Argv": [ "phase.simple.py" ], "platform": { "architecture": [ "64bit", "ELF" ], "machine": "x86_64", "node": "redacted", "platform": "Linux-5.10.0-26-amd64-x86_64-with-glibc2.31", "processor": "", "release": "5.10.0-26-amd64", "system": "Linux", "version": "#1 SMP Debian 5.10.197-1 (2023-09-29)" }, "package": { "python": "3.11.5 (main, Sep 11 2023, 13:54:46) [GCC 11.2.0]", "fipy": "3.4.4+9.g9db4ae960", "numpy": "1.26.3", "pysparse": "not installed", "scipy": "1.11.4", "matplotlib": "3.8.2", "mpi4py": "not installed", "petsc4py": "not installed", "pyamgx": "not installed", "PyTrilinos": "not installed", "mayavi": "not installed", "gmsh": "4.7.1", "solver": "scipy" }, "conda": { "conda_info": { "GID": 100, "UID": 54620, "active_prefix": "/opt/anaconda/envs/fipy", "active_prefix_name": "fipy", "av_data_dir": "/opt/anaconda/etc/conda", "av_metadata_url_base": null, "channels": [ "https://conda.anaconda.org/conda-forge/linux-64", "https://conda.anaconda.org/conda-forge/noarch" ], "conda_build_version": "not installed", "conda_env_version": "23.11.0", "conda_location": "/opt/anaconda/lib/python3.11/site-packages/conda", "conda_prefix": "/opt/anaconda", "conda_shlvl": 1, "conda_version": "23.11.0", "config_files": [ "~/.condarc" ], "default_prefix": "/opt/anaconda/envs/fipy", "env_vars": { "CIO_TEST": "", "CONDAPATH": "/opt/anaconda", "CONDA_DEFAULT_ENV": "fipy", "CONDA_EXE": "/opt/anaconda/bin/conda", "CONDA_PREFIX": "/opt/anaconda/envs/fipy", "CONDA_PROMPT_MODIFIER": "(fipy) ", "CONDA_PYTHON_EXE": "/opt/anaconda/bin/python", "CONDA_ROOT": "/opt/anaconda", "CONDA_SHLVL": "1", "CURL_CA_BUNDLE": "", "GEM_PATH": "~/.rvm/gems/ruby-2.7.2:~/.rvm/gems/ruby-2.7.2@global", "LD_PRELOAD": "", "LMOD_DEFAULT_MODULEPATH": "~/research/modules/modulefiles:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles", "MANPATH": "~/.nvm/versions/node/v18.9.0/share/man:/usr/share/lmod/lmod/share/man::", "MMSP_PATH": "~/research/projects/mmsp", "MODULEPATH": "~/research/modules/modulefiles:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles", "PATH": "/opt/anaconda/bin:/opt/anaconda/envs/fipy/bin:/opt/anaconda/bin:/opt/anaconda/condabin:/opt/anaconda/bin:~/.rvm/gems/ruby-2.7.2/bin:~/.rvm/gems/ruby-2.7.2@global/bin:~/.rvm/rubies/ruby-2.7.2/bin:~/.cargo/bin:~/.nvm/versions/node/v18.9.0/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:~/bin:~/.local/bin:/usr/local/tnk10/bin:/usr/sbin:~/research/projects/mmsp/utility:~/.rvm/bin", "PYTHONPYCACHEPREFIX": "/tmp/tnk10/pycache", "QT_QPA_PLATFORM_PLUGIN_PATH": "/usr/lib/x86_64-linux-gnu/qt5/plugins/platforms", "REQUESTS_CA_BUNDLE": "", "SSL_CERT_FILE": "", "SUDO_PROMPT": "\u001b[0;34m[Enter \u001b[0;36mtnk10's\u001b[0;34m password to \u001b[0;35msudo\u001b[0;34m]:\u001b[0;39m ", "SUDO_PS1": "\\[\\e[1;31m\\]\\U@\\H:\\w$", "rvm_bin_path": "~/.rvm/bin", "rvm_path": "~/.rvm" }, "envs": [ "/opt/anaconda", "/opt/anaconda/envs/dft", "/opt/anaconda/envs/fipy", "/opt/anaconda/envs/py3" ], "envs_dirs": [ "/opt/anaconda/envs", "~/.conda/envs" ], "netrc_file": "~/.netrc", "offline": false, "pkgs_dirs": [ "/opt/anaconda/pkgs", "~/.conda/pkgs" ], "platform": "linux-64", "python_version": "3.11.5.final.0", "rc_path": "~/.condarc", "requests_version": "2.31.0", "root_prefix": "/opt/anaconda", "root_writable": true, "site_dirs": [ "~/.local/lib/python3.9", "~/.local/lib/python3.5" ], "solver": { "default": true, "name": "libmamba", "user_agent": "solver/libmamba conda-libmamba-solver/23.12.0 libmambapy/1.5.3" }, "sys.executable": "/opt/anaconda/bin/python", "sys.prefix": "/opt/anaconda", "sys.version": "3.11.5 (main, Sep 11 2023, 13:54:46) [GCC 11.2.0]", "sys_rc_path": "/opt/anaconda/.condarc", "user_agent": "conda/23.11.0 requests/2.31.0 CPython/3.11.5 Linux/5.10.0-26-amd64 debian/11.8 glibc/2.31 solver/libmamba conda-libmamba-solver/23.12.0 libmambapy/1.5.3", "user_rc_path": "~/.condarc", "virtual_pkgs": [ [ "__archspec", "1", "zen3" ], [ "__conda", "23.11.0", "0" ], [ 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"libunistring=0.9.10=h7f98852_0", "libuuid=2.38.1=h0b41bf4_0", "libva=2.20.0=hd590300_0", "libvorbis=1.3.7=h9c3ff4c_0", "libvpx=1.13.1=h59595ed_0", "libwebp-base=1.3.2=hd590300_0", "libxcb=1.15=h0b41bf4_0", "libxcrypt=4.4.36=hd590300_1", "libxkbcommon=1.6.0=h5d7e998_0", "libxml2=2.11.6=h232c23b_0", "libzip=1.10.1=h2629f0a_3", "libzlib=1.2.13=hd590300_5", "loguru=0.7.2=py310hff52083_1", "lz4-c=1.9.4=hcb278e6_0", "matplotlib-base=3.8.2=py310h62c0568_0", "mayavi=4.8.1=py310he4a938c_7", "metis=5.1.1=h59595ed_2", "mpfr=4.2.1=h9458935_0", "mpg123=1.32.3=h59595ed_0", "mpi=1.0=mpich", "mpi4py=3.1.5=py310h30280a6_0", "mpich=4.1.2=h846660c_101", "multidict=6.0.4=py310h2372a71_1", "mumps-include=5.2.1=ha770c72_14", "mumps-mpi=5.2.1=h5b51c9e_14", "munkres=1.1.4=pyh9f0ad1d_0", "mysql-common=8.0.33=hf1915f5_6", "mysql-libs=8.0.33=hca2cd23_6", "ncurses=6.4=h59595ed_2", "nettle=3.9.1=h7ab15ed_0", "nlohmann_json=3.11.2=h27087fc_0", "nspr=4.35=h27087fc_0", "nss=3.96=h1d7d5a4_0", "numpy=1.26.3=py310hb13e2d6_0", "openh264=2.4.0=h59595ed_0", "openjpeg=2.5.0=h488ebb8_3", "openssl=3.2.0=hd590300_1", "p11-kit=0.24.1=hc5aa10d_0", "packaging=23.2=pyhd8ed1ab_0", "parmetis=4.0.3=h2a9763c_1005", "pcre2=10.42=hcad00b1_0", "petsc=3.20.3=real_h3d2a624_100", "petsc4py=3.20.3=real_hbd52a53_100", "pillow=10.2.0=py310h01dd4db_0", "pip=23.3.2=pyhd8ed1ab_0", "pixman=0.43.0=h59595ed_0", "ply=3.11=py_1", "proj=9.3.1=h1d62c97_0", "pthread-stubs=0.4=h36c2ea0_1001", "ptscotch=7.0.4=h23d43cc_1", "pugixml=1.14=h59595ed_0", "pulseaudio-client=16.1=hb77b528_5", "pyface=8.0.0=pyhd8ed1ab_0", "pygments=2.17.2=pyhd8ed1ab_0", "pyparsing=3.1.1=pyhd8ed1ab_0", "pyqt=5.15.9=py310h04931ad_5", "pyqt5-sip=12.12.2=py310hc6cd4ac_5", "python=3.10.13=hd12c33a_1_cpython", "python-dateutil=2.8.2=pyhd8ed1ab_0", "python_abi=3.10=4_cp310", "qt-main=5.15.8=h82b777d_17", "readline=8.2=h8228510_1", "scalapack=2.2.0=hd931219_1", "scipy=1.11.4=py310hb13e2d6_0", "scotch=7.0.4=h23d43cc_1", "setuptools=69.0.3=pyhd8ed1ab_0", "sip=6.7.12=py310hc6cd4ac_0", "six=1.16.0=pyh6c4a22f_0", "snappy=1.1.10=h9fff704_0", "sqlite=3.44.2=h2c6b66d_0", "suitesparse=5.10.1=h3ec001c_2", "superlu=5.2.2=h00795ac_0", "superlu_dist=8.2.1=h5902e8c_0", "svt-av1=1.7.0=h59595ed_0", "tbb=2021.11.0=h00ab1b0_0", "tbb-devel=2021.11.0=h00ab1b0_0", "tk=8.6.13=noxft_h4845f30_101", "toml=0.10.2=pyhd8ed1ab_0", "tomli=2.0.1=pyhd8ed1ab_0", "traits=6.4.3=py310h2372a71_0", "traitsui=8.0.0=pyhd8ed1ab_0", "typing-extensions=4.9.0=hd8ed1ab_0", "typing_extensions=4.9.0=pyha770c72_0", "tzdata=2023d=h0c530f3_0", "unicodedata2=15.1.0=py310h2372a71_0", "utfcpp=4.0.5=ha770c72_0", "vtk=9.2.6=qt_py310h1234567_220", "vtk-base=9.2.6=qt_py310h1234567_220", "vtk-io-ffmpeg=9.2.6=qt_py310h1234567_220", "wheel=0.42.0=pyhd8ed1ab_0", "wslink=1.12.4=pyhd8ed1ab_0", "x264=1!164.3095=h166bdaf_2", "x265=3.5=h924138e_3", "xcb-util=0.4.0=hd590300_1", "xcb-util-image=0.4.0=h8ee46fc_1", "xcb-util-keysyms=0.4.0=h8ee46fc_1", "xcb-util-renderutil=0.3.9=hd590300_1", "xcb-util-wm=0.4.1=h8ee46fc_1", "xkeyboard-config=2.40=hd590300_0", "xorg-fixesproto=5.0=h7f98852_1002", "xorg-kbproto=1.0.7=h7f98852_1002", "xorg-libice=1.1.1=hd590300_0", "xorg-libsm=1.2.4=h7391055_0", "xorg-libx11=1.8.7=h8ee46fc_0", "xorg-libxau=1.0.11=hd590300_0", "xorg-libxdmcp=1.1.3=h7f98852_0", "xorg-libxext=1.3.4=h0b41bf4_2", "xorg-libxfixes=5.0.3=h7f98852_1004", "xorg-libxrender=0.9.11=hd590300_0", "xorg-libxt=1.3.0=hd590300_1", "xorg-renderproto=0.11.1=h7f98852_1002", "xorg-xextproto=7.3.0=h0b41bf4_1003", "xorg-xf86vidmodeproto=2.3.1=h7f98852_1002", "xorg-xproto=7.0.31=h7f98852_1007", "xz=5.2.6=h166bdaf_0", "yaml=0.2.5=h7f98852_2", "yarl=1.9.3=py310h2372a71_0", "zipp=3.17.0=pyhd8ed1ab_0", "zlib=1.2.13=hd590300_5", "zstd=1.5.5=hfc55251_0", { "pip": [ "scikit-fmm==2023.4.2" ] } ], "name": "fipy", "prefix": "/opt/anaconda/envs/fipy" } } } ```

wd15 commented 8 months ago

With FIPY_LOG_CONFIG=fipy/tools/logging/serial_config.json python examples/diffusion/mesh1D.py it's giving

Solver suite is scipy
Uncaught exception:
Traceback (most recent call last):
  File "/home/wd15/git/fipy/examples/diffusion/mesh1D.py", line 859, in <module>
    import fipy.tests.doctestPlus
  File "/home/wd15/git/fipy/fipy/__init__.py", line 77, in <module>
    _fipy_environment["conda"] = environment.conda_info()
  File "/home/wd15/git/fipy/fipy/tools/logging/environment.py", line 23, in conda_info
    p = subprocess.Popen([conda, "info", "--json"], stdout=subprocess.PIPE)
  File "/nix/store/zdba9frlxj2ba8ca095win3nphsiiqhb-python3-3.10.8/lib/python3.10/subprocess.py", line 971, in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
  File "/nix/store/zdba9frlxj2ba8ca095win3nphsiiqhb-python3-3.10.8/lib/python3.10/subprocess.py", line 1847, in _execute_child
    raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'conda'

guyer commented 8 months ago

FileNotFoundError: [Errno 2] No such file or directory: 'conda'

Definitely needs a try-except, at a minimum. Also should log other installation modes, as appropriate (pip, nix, ...).

wd15 commented 8 months ago

FileNotFoundError: [Errno 2] No such file or directory: 'conda'
Definitely needs a try-except, at a minimum. Also should log other installation modes, as appropriate (pip, nix, ...).

Ok, I can help with that. Once you've implemented I'll test and add Nix or whatever else there is. Would all the conda variants be covered by just conda?

guyer commented 8 months ago

Would all the conda variants be covered by just conda?

They should be. I'm pretty sure there's always a 'conda' command even if you started with 'mamba', and the subprocess should be launched within the environment you're running in, regardless of how many different conda/mamba/micromamba/miniconda environments you have installed (cough cough don't look at my hard drive!).

guyer commented 8 months ago

OK, I've try-excepted conda and I've added pip and the environment variables.

@wd15, please add a clause for nix

wd15 commented 8 months ago

Ok, it runs for me now. I get the following, fipy.log. Not seeing anything nice like Trevor's output, but I suppose that's what I'm supposed to see? I'll add the Nix clause in the later Nix PR, #992.

tkphd commented 8 months ago

emacs' json-mode-beautify

Your log ends with

2024-01-22 15:48:01,017 - ERROR - fipy - _excepthook - Uncaught exception:
Traceback (most recent call last):
File "/home/wd15/git/fipy/examples/diffusion/mesh1D.py", line 860, in <module>
exec(fipy.tests.doctestPlus._getScript())
File "<string>", line 731, in <module>
File "/home/wd15/git/fipy/fipy/terms/term.py", line 178, in solve
solver._solve()
File "/home/wd15/git/fipy/fipy/solvers/scipy/scipySolver.py", line 26, in _solve
self.var[:] = numerix.reshape(self._solve_(self.matrix, self.var.ravel(), 
numerix.array(self.RHSvector)), self.var.shape)
File "/home/wd15/git/fipy/fipy/solvers/scipy/linearLUSolver.py", line 29, in _solve_
LU = splu(L.matrix.asformat("csc"), diag_pivot_thresh=1.,
File "/nix/store/36py479ab6q1gywrvqmhx1kxcbsg7js0-python3.10-scipy-1.9.1/lib/python3.10/site-packages/scipy/sparse/linalg/_dsolve/linsolve.py", line 366, in splu
return _superlu.gstrf(N, A.nnz, A.data, A.indices, A.indptr,
RuntimeError: Factor is exactly singular

That's not the preferred outcome.

wd15 commented 8 months ago

@guyer, merge this one and I can merge it into #992 to add the Nix info clause

usnistgov / fipy

Log much more information about FiPy environment #990