Closed mfrichtl closed 1 year ago
@mfrichtl, the new version of the PFHub website is available at https://random-cat-1483.surge.sh
Hi @mfrichtl, thanks for your upload! The plots for BM1 assume your CSV file contains a column named "total_energy" that represents the total system free energy, i.e. the integrated functional $$\mathcal{F} = \int\limits_V \left[f(c) + \frac{\kappa}{2}|\nabla c|^2 \right]\mathrm{d}V$$ but your CSV contain a column named "bulk_energy". The number (319.04) looks correct; please rename the column, and maybe the plot will load?
@tkphd -- My "bulk_energy" column is actually just the first term in the integral. I do have a "total_energy" column in my csv that also includes the gradient energy contribution. Do I need to only have "time" and "total_energy" columns for the plot to show up correctly?
Oh, so you do! My mistake. You can have whatever columns make you happy in the CSV, so long as "time" and "total_energy" are among them, so you're good.
Check out this pull request on
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@mfrichtl, the new version of the PFHub website is available at https://random-cat-1483.surge.sh
@mfrichtl: looks good now! See here. Also, check that your results looks correct in the efficiency plot.
Edit: let me know in the comments that you're happy with this and then I'll merge.
@tkphd, @guyer: please check. Thanks.
@wd15 I'm happy with this run and the free energy values I pulled from the simulation. I'll be running more benchmark problems to continue (hopefully) improving my modeling skills.
Successful teardown of random-cat-1483.surge.sh
Second attempt to add my results for benchmark problem 1a.