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uw-ipd / RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction
MIT License
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The error to predict the protein and RNA structure #21

Closed lj734999889 closed 1 year ago

lj734999889 commented 1 year ago

When I use this code, the machine reports wrong, shown as below, did you know how to resolve this? Thank you very much.

Traceback (most recent call last): File "/home/software/RoseTTAFold2NA/network/predict.py", line 345, in pred.predict(inputs=args.inputs, out_prefix=args.prefix, ffdb=ffdb) File "/home/software/RoseTTAFold2NA/network/predict.py", line 146, in predict msa_i, ins_i = parse_a3m(a3m_i, unzip=False) File "/home/software/RoseTTAFold2NA/network/parsers.py", line 221, in parse_a3m msa = np.array([list(s) for s in msa], dtype='|S1').view(np.uint8) ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (722,) + inhomogeneous part.

lj734999889 commented 1 year ago

I‘ve solved this problem. That's caused by my own wrong .a3m files.