When I run the example in the README:
../run_RF2NA.sh t000_ protein.fa R:RNA.fa
it runs fine.
But rather than a "per-residue LDDT in the B-factor column" of the PDB, I see 1.00 for all residues.
Note, the pLDDT seems to be calculated OK: it is accessible via the provided .npz file, though this isn't particularly convenient.
Output model in this zip: model_00.zip.
(As an aside, there's also a bit of a clash in the region 147 UAUA 150, but I don't think this is related).
Hi, thanks for open-sourcing this model!
When I run the example in the README:
../run_RF2NA.sh t000_ protein.fa R:RNA.fait runs fine. But rather than a "per-residue LDDT in the B-factor column" of the PDB, I see 1.00 for all residues.Note, the pLDDT seems to be calculated OK: it is accessible via the provided .npz file, though this isn't particularly convenient.
Output model in this zip: model_00.zip. (As an aside, there's also a bit of a clash in the region 147 UAUA 150, but I don't think this is related).