How can I replace coordinates in the PDB templates? The pdb100_2021Mar03_pdb.ffindex lists the 2 chains for my dimer of interest, but the coordinates do not correspond to the biological dimer.
I believe this may be the reason that RoseTTAFold2NA is failing to keep the protein dimer when it attempts to bind the RNA.
How can I replace coordinates in the PDB templates? The pdb100_2021Mar03_pdb.ffindex lists the 2 chains for my dimer of interest, but the coordinates do not correspond to the biological dimer. I believe this may be the reason that RoseTTAFold2NA is failing to keep the protein dimer when it attempts to bind the RNA.