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uw-ipd / RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction
MIT License
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Issue when running on GPU #60

Closed retiro closed 10 months ago

retiro commented 11 months ago

Hi,

after strictly following the installation instructions, I activated RF2NA conda environment, positioned in the example folder and ran the RNA structure prediction by executing the following instruction:

../run_RF2NA.sh rna_pred R:RNA.fa

After running the rMSA, RNA.afa appears in the rna_pred folder. Afterward, it says: Running on GPU and after a while the execution stops saying:

plddt best ../run_RF2NA.sh: line 131: 3899038 Floating point exception(core dumped) python $PIPEDIR/network/predict.py -inputs $argstring -prefix $WDIR/models/model -model $PIPEDIR/network/weights/RF2NA_apr23.pt -db $HHDB

After debugging, it seems that the problem is somewhere in SE3Transformer, but I could not figure it out.

Has anyone encountered the same issue or does it seem familiar to you?

Thanks.

VincentQTran commented 6 months ago

did you figure out what the solution was to this Floating point exception?