Closed uwesterr closed 4 years ago
right now it takes about 7h to run optimizingChain.R as cronjob. the parameter parallel is set to 4. at https://cran.r-project.org/web/packages/GA/vignettes/GA.html#parallel-computing there is a test for different settings of that parameter.
parallel
running the test
library(GA) fitness <- function(x) { Sys.sleep(0.01) x*runif(1) } library(rbenchmark) maxiter <- 10 out <- benchmark( GA1 = ga(type = "real-valued", fitness = fitness, lower = 0, upper = 1, popSize = 50, maxiter = maxiter, monitor = FALSE, seed = 12345), GA2 = ga(type = "real-valued", fitness = fitness, lower = 0, upper = 1, popSize = 50, maxiter = maxiter, monitor = FALSE, seed = 12345, parallel = TRUE), GA3 = ga(type = "real-valued", fitness = fitness, lower = 0, upper = 1, popSize = 50, maxiter = maxiter, monitor = FALSE, seed = 12345, parallel = 4), GA4 = ga(type = "real-valued", fitness = fitness, lower = 0, upper = 1, popSize = 50, maxiter = maxiter, monitor = FALSE, seed = 12345, parallel = "snow"), columns = c("test", "replications", "elapsed", "relative"), order = "test", replications = 10)
logged into the RStudio server gets the following result
test replications elapsed relative 1 GA1 10 41.724 2.367 2 GA2 10 17.630 1.000 3 GA3 10 23.835 1.352 4 GA4 10 157.097 8.911
and shows that with 4 cores the computation is almost twice as fast as without parallelisation.
right now it takes about 7h to run optimizingChain.R as cronjob. the parameter
parallel
is set to 4. at https://cran.r-project.org/web/packages/GA/vignettes/GA.html#parallel-computing there is a test for different settings of that parameter.running the test
logged into the RStudio server gets the following result
test replications elapsed relative 1 GA1 10 41.724 2.367 2 GA2 10 17.630 1.000 3 GA3 10 23.835 1.352 4 GA4 10 157.097 8.911
and shows that with 4 cores the computation is almost twice as fast as without parallelisation.