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uym2 / TreeShrink

Implementation of the TreeShrink problem
https://uym2.github.io/TreeShrink/
GNU General Public License v3.0
36 stars 11 forks source link

No module named treeshrink.sequence_lib #43

Open BioinfoAK opened 9 months ago

BioinfoAK commented 9 months ago

Hi all,

I am trying to use TreeShrink on my HPC account.

I have downloaded TreeShrink via conda and via Git. When I try to check that everything is okay by running run_treeshrink -h, I get the same issue in both cases: 


Traceback (most recent call last):
  File "/home/ak5g21/.conda/envs/dnds/bin/run_treeshrink", line 3, in <module>
    from treeshrink.sequence_lib import sample_from_list
ImportError: No module named treeshrink.sequence_lib

I do not understand what treeshrink.sequence_lib and how to download it/fix the issue. Does anyone have any suggestions?

Many thanks!

rj-moore commented 1 week ago

Hello,

I'm also having a similar problem and haven't been able to find a way to fix this yet:

Traceback (most recent call last):
  File "/mnt/shared/scratch/username/apps/conda/envs/python3.8/bin/run_treeshrink.py", line 3, in <module>
    from treeshrink.sequence_lib import sample_from_list
ModuleNotFoundError: No module named 'treeshrink'

Any help would be greatly appreciated!