maartenbreddels
commented
4 years ago Hi,
thanks for the report. We don't have a python38 wheel for windows yet, you could try switching to python37.
Regards,
Maarten
Closed Code4SAFrankie closed 4 years ago
maartenbreddels
commented
4 years ago Hi,
thanks for the report. We don't have a python38 wheel for windows yet, you could try switching to python37.
Regards,
Maarten
komskisp
commented
3 years ago I have same issue or similar using python 3.9 and MacOS Big Sur
Installing collected packages: vaex-core, s3fs, h5py, vaex-hdf5 Running setup.py install for vaex-core ... error ERROR: Command errored out with exit status 1: command: /Users/pauliuskomskis/Desktop/env/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/setup.py'"'"'; file='"'"'/private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-record-blpytd7o/install-record.txt --single-version-externally-managed --compile --install-headers /Users/pauliuskomskis/Desktop/env/include/site/python3.9/vaex-core cwd: /private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/ Complete output (186 lines): /private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/setup.py:4: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running install running build running build_py creating build creating build/lib.macosx-10.9-x86_64-3.9 creating build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/scopes.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/geo.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/serialize.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/functions.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/misc_cmdline.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/promise.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/expresso.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/execution.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/grids.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/tasks.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/version.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/encoding.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/benchmark.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/legacy.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/dataset_mmap.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/_version.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/samp.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/events.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/dataframe.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/asyncio.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/cpu.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/datasets.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/init.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/dataset_utils.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/formatting.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/selections.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/export.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/dataset.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/hash.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/delayed.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/utils.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/kld.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/stat.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/parallelize.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/settings.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/array_types.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/agg.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/groupby.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/expression.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/json.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/image.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/main.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/strings.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/column.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/multithreading.py -> build/lib.macosx-10.9-x86_64-3.9/vaex copying vaex/meta.py -> build/lib.macosx-10.9-x86_64-3.9/vaex creating build/lib.macosx-10.9-x86_64-3.9/vaex/core copying vaex/core/_version.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/core copying vaex/core/init.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/core creating build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/colfits.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/cache.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/init.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/other.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/gadget.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/s3.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file copying vaex/file/column.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/file creating build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/misc.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/expresso.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/plot.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/ui.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/init.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/all.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/dataset.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/main.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test copying vaex/test/cmodule.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/test creating build/lib.macosx-10.9-x86_64-3.9/vaex/ext copying vaex/ext/ipyvolume.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/ext copying vaex/ext/jprops.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/ext copying vaex/ext/readcol.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/ext copying vaex/ext/init.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/ext copying vaex/ext/common.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/ext copying vaex/ext/bokeh.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/ext creating build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/ordereddict.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/samp.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/expressions.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/init.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/pandawrap.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/progressbar.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc copying vaex/misc/parallelize.py -> build/lib.macosx-10.9-x86_64-3.9/vaex/misc creating build/lib.macosx-10.9-x86_64-3.9/vaex/test/files copying vaex/test/files/gaia-small-colfits-basic.fits -> build/lib.macosx-10.9-x86_64-3.9/vaex/test/files copying vaex/test/files/gaia-small-fits-basic.fits -> build/lib.macosx-10.9-x86_64-3.9/vaex/test/files copying vaex/test/files/gaia-small-colfits-plus.fits -> build/lib.macosx-10.9-x86_64-3.9/vaex/test/files copying vaex/test/files/gaia-small-fits-plus.fits -> build/lib.macosx-10.9-x86_64-3.9/vaex/test/files copying vaex/test/files/gaia-small-votable.vot -> build/lib.macosx-10.9-x86_64-3.9/vaex/test/files copying vaex/test/files/default_amuse_plummer.hdf5 -> build/lib.macosx-10.9-x86_64-3.9/vaex/test/files running build_ext building 'vaex.vaexfast' extension creating build/temp.macosx-10.9-x86_64-3.9 creating build/temp.macosx-10.9-x86_64-3.9/src gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I/Users/pauliuskomskis/Desktop/env/lib/python3.9/site-packages/numpy/core/include -I/Users/pauliuskomskis/Desktop/env/include -I/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c src/vaexfast.cpp -o build/temp.macosx-10.9-x86_64-3.9/src/vaexfast.o -std=c++11 -mfpmath=sse -O3 -funroll-loops -g -mmacosx-version-min=10.9 In file included from src/vaexfast.cpp:31: In file included from /Users/pauliuskomskis/Desktop/env/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Users/pauliuskomskis/Desktop/env/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /Users/pauliuskomskis/Desktop/env/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /Users/pauliuskomskis/Desktop/env/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
^
src/vaexfast.cpp:743:2: warning: '/*' within block comment [-Wcomment]
/**/
^
src/vaexfast.cpp:665:12: warning: unused variable 'i_x' [-Wunused-variable]
long long i_x = offset_x;
^
src/vaexfast.cpp:666:12: warning: unused variable 'i_y' [-Wunused-variable]
long long i_y = offset_y;
^
4 warnings generated.
g++ -bundle -undefined dynamic_lookup -arch x86_64 -g build/temp.macosx-10.9-x86_64-3.9/src/vaexfast.o -o build/lib.macosx-10.9-x86_64-3.9/vaex/vaexfast.cpython-39-darwin.so
building 'vaex.superstrings' extension
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I/Users/pauliuskomskis/Desktop/env/lib/python3.9/site-packages/numpy/core/include -Ivendor/pybind11/include -Ivendor/pybind11/include -Ivendor/string-view-lite/include -Ivendor/boost -I/Users/pauliuskomskis/Desktop/env/include -I/Users/pauliuskomskis/Desktop/env/Library/include -I/private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/vendor/pcre/Library/include -I/Users/pauliuskomskis/Desktop/env/include -I/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9 -c src/strings.cpp -o build/temp.macosx-10.9-x86_64-3.9/src/strings.o -std=c++11 -mfpmath=sse -O3 -funroll-loops -g -mmacosx-version-min=10.9
In file included from src/strings.cpp:7:
In file included from vendor/pybind11/include/pybind11/pybind11.h:44:
In file included from vendor/pybind11/include/pybind11/attr.h:13:
In file included from vendor/pybind11/include/pybind11/cast.h:16:
vendor/pybind11/include/pybind11/detail/internals.h:200:9: warning: 'PyEval_InitThreads' is deprecated [-Wdeprecated-declarations]
PyEval_InitThreads();
^
/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9/ceval.h:130:1: note: 'PyEval_InitThreads' has been explicitly marked deprecated here
Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
^
/Library/Frameworks/Python.framework/Versions/3.9/include/python3.9/pyport.h:508:54: note: expanded from macro 'Py_DEPRECATED'
#define Py_DEPRECATED(VERSION_UNUSED) __attribute__((__deprecated__))
^
In file included from src/strings.cpp:7:
In file included from vendor/pybind11/include/pybind11/pybind11.h:44:
In file included from vendor/pybind11/include/pybind11/attr.h:13:
vendor/pybind11/include/pybind11/cast.h:2007:26: warning: loop variable 'a' is always a copy because the range of type 'detail::args_proxy' does not return a reference [-Wrange-loop-analysis]
for (const auto &a : ap)
^
vendor/pybind11/include/pybind11/cast.h:2007:14: note: use non-reference type 'pybind11::handle'
for (const auto &a : ap)
^~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/cast.h:2039:26: warning: loop variable 'k' is always a copy because the range of type 'pybind11::dict' does not return a reference [-Wrange-loop-analysis]
for (const auto &k : reinterpret_borrow<dict>(kp)) {
^
vendor/pybind11/include/pybind11/cast.h:2039:14: note: use non-reference type 'std::__1::pair<pybind11::handle, pybind11::handle>'
for (const auto &k : reinterpret_borrow<dict>(kp)) {
^~~~~~~~~~~~~~~
In file included from src/strings.cpp:7:
vendor/pybind11/include/pybind11/pybind11.h:1398:34: warning: loop variable 'kv' is always a copy because the range of type 'pybind11::dict' does not return a reference [-Wrange-loop-analysis]
for (const auto &kv : entries) {
^
vendor/pybind11/include/pybind11/pybind11.h:1398:22: note: use non-reference type 'std::__1::pair<pybind11::handle, pybind11::handle>'
for (const auto &kv : entries) {
^~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/pybind11.h:1410:34: warning: loop variable 'kv' is always a copy because the range of type 'pybind11::dict' does not return a reference [-Wrange-loop-analysis]
for (const auto &kv : entries) {
^
vendor/pybind11/include/pybind11/pybind11.h:1410:22: note: use non-reference type 'std::__1::pair<pybind11::handle, pybind11::handle>'
for (const auto &kv : entries) {
^~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/pybind11.h:1425:34: warning: loop variable 'kv' is always a copy because the range of type 'pybind11::dict' does not return a reference [-Wrange-loop-analysis]
for (const auto &kv : entries) {
^
vendor/pybind11/include/pybind11/pybind11.h:1425:22: note: use non-reference type 'std::__1::pair<pybind11::handle, pybind11::handle>'
for (const auto &kv : entries) {
^~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/pybind11.h:1439:34: warning: loop variable 'kv' is always a copy because the range of type 'pybind11::dict' does not return a reference [-Wrange-loop-analysis]
for (const auto &kv : entries)
^
vendor/pybind11/include/pybind11/pybind11.h:1439:22: note: use non-reference type 'std::__1::pair<pybind11::handle, pybind11::handle>'
for (const auto &kv : entries)
^~~~~~~~~~~~~~~~
vendor/pybind11/include/pybind11/pybind11.h:1516:26: warning: loop variable 'kv' is always a copy because the range of type 'pybind11::dict' does not return a reference [-Wrange-loop-analysis]
for (const auto &kv : entries)
^
vendor/pybind11/include/pybind11/pybind11.h:1516:14: note: use non-reference type 'std::__1::pair<pybind11::handle, pybind11::handle>'
for (const auto &kv : entries)
^~~~~~~~~~~~~~~~
src/strings.cpp:28:10: fatal error: 'pcrecpp.h' file not found
#include <pcrecpp.h>
^~~~~~~~~~~
8 warnings and 1 error generated.
error: command '/usr/bin/gcc' failed with exit code 1
----------------------------------------ERROR: Command errored out with exit status 1: /Users/pauliuskomskis/Desktop/env/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/setup.py'"'"'; file='"'"'/private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-install-d8hfbx78/vaex-core_4bc5f7c896904b97b8c73d224626d7dc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/0s/g0hqggvs5ygfvjvsbc5gdd740000gn/T/pip-record-blpytd7o/install-record.txt --single-version-externally-managed --compile --install-headers /Users/pauliuskomskis/Desktop/env/include/site/python3.9/vaex-core Check the logs for full command output.
Any thoughts?
.\python.exe -m pip install --upgrade vaexfails on WinPython 3.8.1 but works on 3.7.1.This is the error:
I am on Windows 10 running WinPython 3.8.1 64 bit.