vagarwal87 / saluki_paper

Saluki, a method to predict mRNA half-lives from sequence
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Weird result: negative correlation between half-life and in-vitro protein expression #9

Closed Jojo-LIU-LIU closed 1 year ago

Jojo-LIU-LIU commented 1 year ago

Hi, Vikram! Thanks for your previous replies, even though I ask some simple questions! HaHaHa..

Based on paper reading, I think 3'UTR has great contribution to the half-life and half-life is a primary driver of protein expression. So, I do correlation analysis between predicted half-life and observed in-vitro protein expression. However, the two statistics have significant negative correlation. It sould be positive in theory, right?

I am trying to analyze the resasons. I am wondering whether you have done the same analysis? Any suggestions? My 3'UTRs are from various sources, human, mouse, virus, etc. Could Saluki generalize to different apiece species?

Jojo-LIU-LIU commented 1 year ago

Done